Table 1.
Characteristics of the 41 strains affiliated to Media species complex on the basis of gyrB sequences analyzed in this study.
| Strain | Clade in MLP | Genome accession number | Sample | Origin | Country (Date of isolation) | References |
|---|---|---|---|---|---|---|
| A. media CCM 4242 | A | River water | Environment | Czech republic (1991) | Sedlácek et al., 1994 | |
| A. rivipollensis LMG 26313T | A | River biofilm (output WWTP) | Environment | Spain (2010) | Marti and Balcázar, 2015 | |
| LL6-17C | A | River water (output WWTP) | Environment | Spain (2012) | This study | |
| SS1-15D | A | WWTP | Environment | Spain (2012) | This study | |
| CR4.2-17C | A | River water | Environment | Spain (2012) | This study | |
| A. hydrophila 4AK4a | A | PRJNA210524b | Raw sewage | Environment | NA (NA) | Gao et al., 2013 |
| A. caviae LMG 13459 = Popoff 239 | A | PRJEB12346b | Fish (infected) | Animal | France (1967-1974) | Popoff and Véron, 1976 |
| A. media AK202 | A | PRJEB12343b | Snail | Animal | France (1995) | Roger et al., 2012b |
| AK208 | A | Snail | Animal | France (1995) | This study | |
| AK210 | A | Snail | Animal | France (1995) | This study | |
| A. hydrophila AH31 | A | Crab | Animal | Norway (1998) | Granum et al., 1998 | |
| R1 | A | Salmon | Animal | Spain (2007) | This study | |
| R100 | A | Trout | Animal | Spain (2007) | This study | |
| 417-16G | A | Mussel | Animal | Spain (2011) | This study | |
| M2C164 = M2C A28 | A | Copepod | Animal | France (2012) | This study | |
| M2C185 = M2C A42 | A | Copepod | Animal | France (2012) | This study | |
| M2C205 = M2C A47 | A | Copepod | Animal | France (2012) | This study | |
| A. media 76C | A | PRJEB8966b | Human diarrheic stool | Clinical | Spain (1992) | Mosser et al., 2015 |
| BVH17 | A | Human urine (healthy carriage) | Clinical | France (2006) | This study | |
| A. media BVH40 | A | PRJEB8017b | Human stool (healthy carriage) | Clinical | France (2006) | Roger et al., 2012a |
| ADV137a | A | Human respiratory tract (near-drowning) | Clinical | France (2010) | This study | |
| A. media CECT 4232T = RM | B | PRJEB7032b | River water (fish farm effluent) | Environment | UK (1980) | Allen et al., 1983 |
| A. media CECT 4234 = P1E | B | River water (fish farm pond) | Environment | UK (1981) | Allen et al., 1983 | |
| T41-3 | B | Soil | Environment | Spain (2010) | This study | |
| T41-7 | B | Soil | Environment | Spain (2010) | This study | |
| RT10-17Ga | B | River water | Environment | Spain (2012) | This study | |
| RT11-17Ga | B | River water | Environment | Spain (2012) | This study | |
| LL4.4-18D | B | River water (input WWTP) | Environment | Spain (2012) | This study | |
| SEL1-18A | B | WWTP | Environment | Spain (2012) | This study | |
| CR4-18pb | B | River water | Environment | Spain (2012) | This study | |
| A. media ARB13a | B | PRJNA260228c | River water | Environment | Japan (2013) | Kenzaka et al., 2014 |
| A. media ARB20a | B | PRJNA260227c | River water | Environment | Japan (2013) | Kenzaka et al., 2014 |
| A. media WSa | B | CP007567.1c | Lake water | Environment | China (2003) | Chai et al., 2012 |
| A. caviae LMG 13464 = Popoff 233 | B | PRJEB12347b | Fish (infected) | Animal | France (1967-1974) | Popoff and Véron, 1976 |
| AK207 | B | Snail | Animal | France (1995) | This study | |
| A. media AK211 | B | PRJEB12344b | Snail | Animal | France (1995) | Roger et al., 2012a |
| Aeromonas sp. CECT 7111 | B | PRJEB12345b | Oyster (Crassostrea gigas) | Animal | Spain (2002) | Miñana-Galbis et al., 2002 |
| BVH83 | B | Human urine (healthy carriage) | Clinical | France (2006) | This study | |
| D84402 | B | Human diarrheic stool | Clinical | Spain (2012) | This study | |
| A. eucrenophila UTS 15 | C | PRJEB12350b | Koi carp | Animal | Australia (2001) | Carson et al., 2001 |
| 1086C = CECT 8838 = LMG 28708 | C | PRJEB12349b | Human diarrheic stool | Clinical | Spain (2010) | This study |
Several strains were wrongly labeled at the time of their isolation but all the 41 strains belonged to the Media SC on the basis of gyrB sequences that is robust enough for their affiliation within the genus Aeromonas, as explained in the main text.
MLP, Multi-Locus Phylogeny; NA, Not available; WWTP, Waste water treatment plant.
a
Strains studied only by genetic and genomic analysis.
b
Obtained from the EMBL Nucleotide Sequence Database.
c
Obtained from GenBank, National Center for Biotechnology Information.