TABLE 1.
Functional annotations of the hypothetical proteins
| Protein | Size (amino acids) | Putative function | Superfamily designation |
|||
|---|---|---|---|---|---|---|
| Region (positions) | Superfamily (specific hit/conserved domain) | CDD accession no. | E value | |||
| PcaA3 | 409 | Pyridine nucleotide-disulphide oxidoreductase | 147–228 | Pyr_redox | pfam00070 | 3.27e-15 |
| 322–405 | Reductase_C | pfam14759 | 5.97e-20 | |||
| PcaE | 275 | Oxidoreductases | 25–260 | SDR_c | cd05233 | 2.21e-62 |
| PcaA1 | 400 | Dioxygenase α-subunit | 57–172 | Rieske_RO_Alpha_N | cd03469 | 2.71e-38 |
| 57–150 | Rieske | pfam00355 | 3.78e-22 | |||
| PcaA2 | 103 | Dioxygenase β-subunit | 1–92 | Ring_hydroxyl_B | pfam00866 | 4.53e-10 |
| PcaC | 313 | Dioxygenase | 147–295 | BphC1-RGP6_C_like | cd07237 | 2.35e-71 |
| 14–135 | BphC1-RGP6_N_like | cd07252 | 8.73e-52 | |||
| 154–269 | Glyoxalase | pfam00903 | 3.36e-21 | |||
| PcaA4 | 106 | Ferredoxin | 4–100 | Rieske_RO_ferredoxin | cd03528 | 5.14e-38 |
| 5–96 | Rieske | pfam00355 | 2.46e-26 | |||
| PcaD | 481 | Monooxygenase | 75–192 | FMO-like | pfam00743 | 7.55e-12 |
| PcaR | 231 | Regulator | 82–196 | FCD (GntR family) | pfam07729 | 1.96e-25 |
| PcaB1 | 431 | Dioxygenase α-subunit | 183–411 | RHO_alpha_C_NDO-like | cd08881 | 6.03e-73 |
| 41–124 | Rieske | pfam00355 | 6.23e-19 | |||
| PcaB2 | 175 | Dioxygenase β-subunit | 10–137 | Ring_hydroxylating_dioxygenases_beta | cd00667 | 1.87e-49 |
| 21–140 | Ring_hydroxyl_B | pfam00866 | 1.36e-46 | |||