Table 1. Binding free energy between PFI-2 and SETD7 predicted by MM/GBSA method.
Contribution | (R)-PFI-2/SETD7 | (S)-PFI-2/SETD7 |
---|---|---|
ΔEele | −374.97 ± 3.67c | −356.80 ± 3.81 |
ΔEvdw | −53.44 ± 2.02 | −46.85 ± 2.50 |
ΔGSA | −6.57 ± 0.48 | −6.78 ± 0.47 |
ΔGGB | 385.17 ± 2.22 | 365.67 ± 2.28 |
ΔGnonpolara | −60.01 ± 4.04 | −53.63 ± 2.54 |
ΔGpolarb | 10.20 ± 4.29 | 15.67 ± 4.44 |
ΔGtotal,GB | −49.81 ± 5.89 | −37.96 ± 5.11 |
−TΔS | 18.58 ± 2.18 | 22.12 ± 3.40 |
ΔGbind | −23.23 ± 6.28 | −15.84 ± 6.14 |
aΔGnonpolar = ΔEvdw + ΔGSA.
bΔGpolar = ΔEele + ΔGGB.
cstandard deviations calculated through 10 times of repeated sampling from last 50 ns trajectory.