Table 2.
Overview of mapped QTLs
| Trait | QTL | Composite interval mapping (CIM) | |||||
|---|---|---|---|---|---|---|---|
| Positiona | Closest SNP | LOD | a | d | R 2 (%) | ||
| PV | qPV11 | 11@19.4 | solcap_snp_sl_36066 | 17.6 | 9.1 | −3.3 | 36.3 |
| PN | qPN7 | 7@134.7 | solcap_snp_sl_12139 | 8.0 | −2.4 | 0.3 | 18.6 |
| SP | qSP1 | 1@16 | solcap_snp_sl_8704 | 8.5 | 0.3 | 0.1 | 19.5 |
| qSP3 | 3@80.4 | solcap_snp_sl_7942 | 12.9 | 0.4 | 0.2 | 28.0 | |
| AL | qAL1 | 1@70 | solcap_snp_sl_42213 | 6.6 | 0.3 | 0.0 | 15.5 |
| qAL2 | 2@80.8 | solcap_snp_sl_36287 | 4.8 | −0.2 | 0.0 | 11.6 | |
| qAL7 | 7@134.7 | solcap_snp_sl_12139 | 11.3 | −0.3 | 0.1 | 25.2 | |
| SL | qSL1 | 1@16 | solcap_snp_sl_8704 | 10.1 | 0.4 | 0.0 | 22.7 |
| qSL2 | 2@80.8 | solcap_snp_sl_36287 | 4.3 | −0.3 | 0.0 | 10.5 | |
| qSL3 | 3@75.8 | solcap_snp_sl_7942 | 6.7 | 0.3 | 0.3 | 15.8 | |
| FPI | qFPI1 | 1@40 | solcap_snp_sl_13762 | 19.1 | 0.7 | 0.0 | 38.7 |
| IN | qIN1 | 1@39 | solcap_snp_sl_13762 | 9.7 | 2.1 | 0.2 | 21.9 |
| qIN8 | 8@95.3 | solcap_snp_sl_15446 | 5.6 | 1.7 | 0.8 | 13.4 | |
PV pollen viability, PN pollen number, SP style protrusion, AL anther length, SL style length, FPI flowers per inflorescence, IN inflorescence number, a additive effect (positive value indicates a positive effect from Nagcarlang, negative value indicates a positive effect from NCHS-1), d dominance effect
aPostition is presented as chromosome@genetic position