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. 2017 Jan 14;45(7):4217–4230. doi: 10.1093/nar/gkw1355

Table 2. Summary of NOE distances violation and energy penalties for the DDD sequence using the NMR data obtained in-house (see ‘Materials and Methods’ section)a.

Structure N° of violations Energy penaltyb (kcal/mol) Average violation (Å) Largest violation (Å)
BSC1-NOE 8 20.4 0.35 0.46
BSC0-NOE 9 22.7 0.35 0.43
BSC0OL15-NOE 14 35.0 0.35 0.47
Standard NMR 5 11.3 0.33 0.40
1NAJc 35 159.2 0.47 0.63
1GIPc 50 265.4 0.51 1.06
X-RAYc 46 332.1 0.60 1.58

aTaking T as 298.15 K, the kT constant has a value of 0.5924812 kcal mol−1. We considered an experimental restraint violated when its average penalty energy was above 3·kT. Given the force constant used to apply the distance restraints (kres = 20 kcal/Å2), 3·kT is equivalent to set a tolerance of ±0.3 Å on the experimental range to consider that a specific distance has been violated.

bFor each distance the energy penalty (Epen) was computed as: Epen = kres(distcalc-distobs)2. Note that we simply reported the sum of each individual Epen.

cA single-point calculation in vacuo was performed on the average experimental structure applying our NMR restraints.