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. 2017 Jan 14;45(7):4217–4230. doi: 10.1093/nar/gkw1355

Table 7. Global accumulated root mean square deviations (RMSd; first row in each cell) and mean signed error (MSE; second row in each cell) forthe six inter base-pair parameters (translations and rotations)adetermined from MD simulations and those obtained from the same sequences using NMR-restrained ensemblesb.

Seq/FF BSC1 BSC0 BSC0OL1 BSC0OL1+OL4 BSC0OL15 CG C36
DDD 0.34 1.07 0.99 0.52 0.42 0.65 1.29
0.00 0.26 0.26 0.06 0.06 −0.24 0.08
SEQ2 0.37 0.80 0.49 0.55 0.44 0.68 1.05
−0.02 0.00 −0.09 −0.05 −0.01 −0.31 −0.13
SEQ3 0.39 0.84 0.65 1.02 0.57 0.71 1.11
−0.02 −0.05 −0.09 0.06 0.04 −0.24 -0.17

aWe used the normalization between translational and rotational parameters proposed by Lankas and coworkers (57).

bValues considered here are the average of BSC0OL15-NOE and BSC1-NOE simulations.