Table 7. Global accumulated root mean square deviations (RMSd; first row in each cell) and mean signed error (MSE; second row in each cell) forthe six inter base-pair parameters (translations and rotations)adetermined from MD simulations and those obtained from the same sequences using NMR-restrained ensemblesb.
Seq/FF | BSC1 | BSC0 | BSC0OL1 | BSC0OL1+OL4 | BSC0OL15 | CG | C36 |
---|---|---|---|---|---|---|---|
DDD | 0.34 | 1.07 | 0.99 | 0.52 | 0.42 | 0.65 | 1.29 |
0.00 | 0.26 | 0.26 | 0.06 | 0.06 | −0.24 | 0.08 | |
SEQ2 | 0.37 | 0.80 | 0.49 | 0.55 | 0.44 | 0.68 | 1.05 |
−0.02 | 0.00 | −0.09 | −0.05 | −0.01 | −0.31 | −0.13 | |
SEQ3 | 0.39 | 0.84 | 0.65 | 1.02 | 0.57 | 0.71 | 1.11 |
−0.02 | −0.05 | −0.09 | 0.06 | 0.04 | −0.24 | -0.17 |
aWe used the normalization between translational and rotational parameters proposed by Lankas and coworkers (57).
bValues considered here are the average of BSC0OL15-NOE and BSC1-NOE simulations.