Table 8. Global accumulated root mean square deviations for the six inter base-pair parameters (translations and rotations)a determined for each model respect to the experimental NMR structuresb.
Seq/source | BigNaSim BSC1 | μABC BSC0 | X-ray naked-DNA | Fiber Arnott-B |
---|---|---|---|---|
DDD | 0.46 | 0.62 | 0.53 | 0.93 |
SEQ2 | 0.74 | 0.70 | 1.35 | 1.42 |
SEQ3 | 0.74 | 0.70 | 1.35 | 1.26 |
aWe used the normalization between translational and rotational parameters proposed by Lankas et al. (57).
bValues considered here are the average of BSC0OL15-NOE and BSC1-NOEresults. Note that the capping base pairs were not considered in the calculations.