Table 2. Type I error rate of the GESE test at different significant levels.

Type I error rate of the GESE test and the weighted GESE test for genes of various sizes (10, 100 or 1000 variants) with LD=0, at different significance levels.

Significance	GESE			Weighted GESE
	10	100	1000	10	100	1000
5 × 10−2	7.1 × 10−3	4.6 × 10−2	4.7 × 10−2	7.1 × 10−3	4.9 × 10−2	4.8 × 10−2
10−2	6.6 × 10−3	8.5 × 10−3	9.3 × 10−3	6.9 × 10−3	9.5 × 10−3	9.4 × 10−3
10−3	7.6 × 10−4	1.0 × 10−3	9.0 × 10−4	9.1 × 10−4	1.1 × 10−3	8.5 × 10−4
10−4	7.3 × 10−5	1.2 × 10−4	7.8 × 10−5	8.8 × 10−5	1.2 × 10−4	8.9 × 10−5