Table 1.
Category | Contigs | Scaffolds (all) | Scaffold (>1 k) |
---|---|---|---|
Number of contigs | 808,710 | 341,168 | 84,681 |
N50 (bp) | 1,551 | 17,908 | 19,156 |
L50 | 92,735 | 14,124 | 10,074 |
Largest contig/scaffolds (bp) | 34,954 | 345,229 | 345,229 |
GC content (%) | 39.27 | 38.80 | 38.77 |
N’s percentage | 3.62 | 3.82 | |
Total span (M) | 733 | 1,021 | 892 |
Estimated coverage (%) | 67.25 | 93.69 | 81.89 |
Number of gene models | 40,124 | ||
Mean transcript length | 1,131 bp | ||
Number of genes annotated | 37,848 (94.32%) |