Table 2. Selection of the 50 genes most up-regulated in the INV and/or MET libraries with respect to the Br_N library from normal mammary epithelium.
| Gene symbol | Br_N | INV | MET | Unigene ID | Genetic map |
|---|---|---|---|---|---|
| Transcription factors/chromatin/nuclear proteins | |||||
| HNRPC | 1 | 35 | 20 | 476302 | 14q11.2 |
| HIF1A | 0 | 0* | 31 | 412416 | 14q21-q24 |
| HMGA1 | 1 | 1* | 26 | 57301 | 6p21 |
| RMP | 0 | 23 | 0* | 7943 | 19q12 |
| H2AFZ | 0 | 1* | 23 | 119192 | 4q24 |
| SRCAP | 1 | 19 | 0* | 136227 | 16p11.2 |
| DHX9 | 0 | 0* | 17 | 374524 | 1q25 |
| PTMA | 1 | 1* | 15 | 459927 | 2q35-q36 |
| ZNF9 | 0 | 0* | 12 | 2110 | 3q21 |
| HMGB1 | 2 | 7* | 22 | 434102 | 13q12 |
| SFRS6 | 1 | 0* | 9 | 6891 | 20q12-q13.1 |
| NME1 | 0 | 1* | 8 | 118638 | 17q21.3 |
| ADNP | 0 | 7 | 0* | 448540 | 20q13.13 |
| Cell cycle/apoptosis/cell growth | |||||
| CEB1 | 0 | 1* | 20 | 26663 | 4q22.1-q23 |
| TGFA | 0 | 15 | 0* | 170009 | 2p13 |
| CTGF | 0 | 13 | 0* | 410037 | 6q23.1 |
| CCNA2 | 0 | 5 | 1* | 85137 | 4q25-q31 |
| SPY1 | 3 | 11 | 0* | 511956 | 2p23.3 |
| Membrane proteins/antigens/receptors/adhesion | |||||
| GAGED2 | 0 | 0* | 36 | 112208 | Xp11.22-p11.21 |
| IFITM3 | 0 | 1* | 27 | 374650 | 11p15.5 |
| STEAP | 0 | 0* | 9 | 61635 | 7q21 |
| Signal transduction | |||||
| DUSP23 | 1 | 1* | 22 | 425801 | 1q23.1 |
| GNG11 | 0 | 0* | 19 | 83381 | 7q31-q32 |
| PTPN1 | 0 | 19 | 0* | 418004 | 20q13.1-q13.2 |
| YWHAZ | 0 | 1* | 15 | 386834 | 8q23.1 |
| GNB2L1 | 3 | 1* | 30 | 5662 | 5q35.3 |
| DGKQ | 0 | 8 | 0* | 99932 | 4p16.3 |
| Secreted and ECM proteins | |||||
| IGFBP4 | 1 | 1* | 12 | 1516 | 17q12-q21.1 |
| FDC-SP | 0 | 9 | 0* | 320147 | 4q13 |
| EDN2 | 1 | 7 | 0* | 1407 | 1p34 |
| FN1 | 0 | 1* | 6 | 418138 | 2q34 |
| Cytoskeleton | |||||
| CYFIP1 | 0 | 14 | 4 | 26704 | 15q11 |
| FSCN1 | 0 | 1* | 23 | 118400 | 7p22 |
| CAP1 | 1 | 0* | 11 | 104125 | 1p34.2 |
| Protein synthesis, transport, and degradation | |||||
| SAE1 | 1 | 0* | 18 | 32748 | 19q13.33 |
| CCT5 | 1 | 2* | 17 | 1600 | 5p15.31 |
| UBA52 | 2 | 3* | 31 | 5308 | 19p13.1-p12 |
| TRAP1 | 0 | 0* | 14 | 183803 | 16p13.3 |
| RPN2 | 0 | 0* | 11 | 406532 | 20q12-q13.1 |
| PPIA | 17 | 27* | 159 | 356331 | 7p13-p11.2 |
| YKT6 | 1 | 8 | 0* | 296244 | 7p15.1 |
| HSPA8 | 7 | 0 | 31 | 180414 | 11q24.1 |
| TPT1 | 48 | 6 | 90 | 374596 | 13q12-q14 |
| Metabolism | |||||
| LDHA | 3 | 1* | 68 | 2795 | 11p15.4 |
| NNMT | 1 | 0* | 16 | 364345 | 11q23.1 |
| ENO1 | 0 | 0* | 11 | 433455 | 1p36.3-p36.2 |
| AHCY | 1 | 1* | 9 | 388004 | 20cen-q13.1 |
| Others | |||||
| SNCAIP | 0 | 23 | 0* | 24948 | 5q23.1-q23.3 |
| ANKRD10 | 0 | 19 | 0* | 164969 | 13q34 |
| OBTP | 1 | 1* | 12 | 525899 | 6p21.31 |
The frequency for each tag is given for a 10,000-tag library. Asterisks refer to tags whose P value is not statistically significant in one of the libraries. Values in italics indicate a P value that is statistically significant, but with expression in the opposing direction in one of the libraries. The complete data are published in Tables 3-8.