Table 5. Markov network (MN) and SVMcon comparison.

Fmax comparisons between Markov network (top-L guesses) and SVMcon of different SCOP protein classes and sequence separations.

SCOP class	Number	Fmax, sep. ≥6		Fmax, sep. ≥12		Fmax, sep. ≥24
		MN, top-L	SVMcon	MN, top-L	SVMcon	MN, top-L	SVMcon
Alpha	11	0.075	0.120	0.012	0.087	0.009	0.050
Beta	10	0.077	0.117	0.073	0.111	0.057	0.096
Alpha+beta	15	0.102	0.161	0.089	0.146	0.067	0.110
Alpha/beta	7	0.099	0.126	0.096	0.121	0.097	0.117
Small	4	0.085	0.120	0.060	0.113	0.023	0.063
Coil-coil	1	0.091	0.142	0.030	0.025	N/A	N/A
All	48	0.090	0.134	0.079	0.120	0.067	0.010