Table 1. Categories of information in Entrez Gene.
Subcategory | Showna | Comments |
---|---|---|
Nomenclature | ||
Gene symbols and full descriptions | Report, Table | Sources: External authorities, GenBank, Publications. ‘LOC’+GeneID designation assigned if none of the above officially accepted nomenclature has precedence |
Protein names | Report, Table | Often same as the gene name, but may be edited to make orthologs' names uniform |
Gene structure and sequence | ||
Gene structure | Report, Table | Based on annotation of the Reference sequence |
Reference sequences | Report, Table, Links | The accessions are shown in the report page; the sequences are retrieved from Nucleotide or Protein |
Related sequences | Report, Links | Based on cDNA or protein comparison, best genomic placement and curation. Accessions are shown in the report page; sequences are retrieved from Nucleotide or Protein |
Genomic position | ||
By sequence | Report, Links | Genomic annotation |
By independent maps | Links | Shared markers or reports of cytogenetic position |
Citations | ||
Not annotated | Links | Sources: external authorities, RefSeq curation |
Annotated | Report, Links | Sources: external databases, GeneRIFs |
Functional annotation | ||
Domain content | Report, Links | Conserved Domain Database (CDD) |
GO terms | Report | GO Consortium |
Pathways and interactions | Report, Links | KEGG, HIV Interactions Database |
Disease and other phenotypes | Report, Links | External authorities such as OMIM, RefSeq curation |
Homology | ||
By Gene | Links | HomoloGene |
By Protein | Links | COG |
Conserved segments | Links | Map Viewer |
Expression | ||
ESTs | Links | UniGene |
External resources | Links | External resource is named and used to anchor a Link. The expression data are available at that source |
Arrays | Links | GEO |
Related information | ||
Integrated by Gene staff | Links | May be displayed on report as well as from Links menu |
External sources | Links | LinkOut choice in Links menu |
aWhere information is shown: Report, Graphic Display; Table, Gene Table Display; Links, Links menu.