Table 3. Nucleotide content and gene count levels of the E. chiriqhucha str. N139 genome.
Attribute | Genome (total) | |
---|---|---|
Value | % of totala | |
Genome size (bp) | 2,952,588 | – |
DNA coding (bp) | 2,655,834 | 89.94 |
DNA G + C (bp) | 52 | |
DNA Scaffolds | 23 | |
N50 | 1,553,709 | |
Total genes | 3,182 | 100 |
RNA genes | 82 | 2.62 |
Protein-coding genes | 3,049 | 95.82 |
Pseudogenes | 26 | 0.81 |
Genes in internal clusters | NA | |
Genes with function prediction | 2,356 | 74.04 |
Genes assigned to COGs | 2,575 | 80.92 |
Genes with Pfam domains | 2,538 | 79.76 |
Genes with signal peptides | NA | |
Genes with transmembran helices | 888 | 27.90 |
CRISPR repeats | 0 |
Notes.
The total is based on either the size of the genome in base pairs or the total number of protein coding genes in the annotated genome.