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. 2017 Mar 2;3(1):vex005. doi: 10.1093/ve/vex005

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© The Author 2017. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Figure 6. — Statistical significance of the differences between branch lengths associated with recombination (BL_r) and mutation (BL_μ) in ML phylogenetic trees for the cp (a) and rep (b) genes. Ninety-five percent bootstrap confidence intervals (CIs) for the difference between branch lengths were estimated from 15,000 nonparametric simulations in R software (R Development Core Team 2007) using the Simpleboot statistical package (Peng 2008). Confidence intervals which include the value ‘zero’ denote no statistically significant difference between the means.