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Maximum likelihood phylogenetic tree of the Rep amino acid sequences inferred using PHYML (Guindon et al. 2010) with LG + G+I substitution model and rooted with geminivirus sequences. The sequences of geminiviruses labeled with the corresponding genera names are used as a guide to identify genera within the Genomoviridae family. The cyan line shows a proposed demarcation of genera for both Genomoviridae and Geminiviridae. Branches with <75% SH-like branch support have been collapsed.
