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. 2017 Apr 21;12(4):e0175960. doi: 10.1371/journal.pone.0175960

Table 2. List of selected gene expression assays.

Gene symbol Assay reference Gene name
Endogenous genes
18S Hs99999901_s1 -
RPL32 Hs00851655_g1 Ribosomal protein L32
Cell survival, proliferation, differentiation
BNIP3 Hs00969291_m1 BCL2/adenovirus E1B 19 kd-interacting protein 3
BRCA1 Hs00173233_m1 Breast cancer 1
CCND1 Hs00277039_m1 Cyclin D1
EPO Hs01071096_g1 Erythropoietin
HER2 Hs01001595_m1 Erythroblastic leukemia viral oncogene homolog 2
IGF2 Hs01005964_g1 Insulin-like growth factor 2
NDRG1 Hs00608387_m1 N-myc downstream regulated gene 1
BNIP3L Hs00188949_m1 BCL2/adenovirus E1B 19kDa interacting protein 3-like
TGFB3 Hs00234245_m1 Transforming growth factor beta
TGM2 Hs00190278_m1 Transglutaminase 2
Transcription factors and feed back
CEBPA Hs00269972_s1 CCAAT/Enhancer binding protein alpha
CITED2 Hs00366696_m1 Cbp/p300-interacting transactivator, 2
ETS1 Hs00901425_m1 v-ets erythroblastosis virus E26 oncogene homolog 1
FOXO3A Hs00921424_m1 Forkhead box O3
NR4A1 Hs00374230_m1 Nuclear receptor subfamily 4, group A, member 1
PHD2 Hs00254392_m1 HIF-prolyl hydroxylase 2
SNAI1 Hs00195591_m1 Snail homolog 1
TWIST1 Hs00361186_m1 Twist homolog 1
VHL Hs00184451_m1 Von Hippel-Lindau
PTEN Hs00829813_s1 Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase
Extracellular matrix, motility
CTSD Hs00157201_m1 Cathepsin D
CDH1 Hs01023895_m1 E-cadherin
KRT19 Hs00761767_s1 Keratin 19
CTGF Hs01026926_g1 Connective tissue growth factor
CXCR4 Hs00607978_s1 Chemokine (C-X-C motif) receptor 4
MET Hs01565582_g1 The proto-oncogene MET
MMP2 Hs00234422_m1 Matrix metallopeptidase 2
PLAUR Hs00182181_m1 Plasminogen activator, urokinase receptor
VIM Hs00185584_m1 Vimentin
Glucose metabolism, pH
GPI Hs00976711_m1 Glucose phosphate isomerase
CA9 Hs00154208_m1 Carbonic anhydrase 9
ENO1 Hs00361415_m1 Enolase 1
GLUT1 Hs00892681_m1 Glucose transporter 1
LDHA Hs00855332_g1 Lactate dehydrogenase A
NHERF1 Hs00188594_m1 Na/H exchanger regulatory factor 1
PGK1 Hs00943178_g1 Phosphoglycerate kinase 1
TPI Hs01593134_gH Triose-phosphate isomerase
Angiogenesis
COX2 Hs01573471_m1 Cyclo-oxygenase 2
EDN1 Hs00174961_m1 Endothelin
ENG Hs00164438_m1 Endoglin
LEP Hs00174877_m1 Leptin
VEGF Hs00900054_m1 Vascular endothelial growth factor
Drug resistance
AK3 Hs00750261_s1 Adenylate Kinase 3
ABCB1 Hs01067802_m1 ATP-binding cassette, sub-family B member 1
ABCG2 Hs01053790_m1 ATP-binding cassette, sub-family G member 2