Table 2.
Number of Genes Identified by HMM for Each Gene Family from Table 1.
| Mdom | Gmor | Aaeg | Adar | Agam | Aste | Cqui | Dana | Dmel | Dmoj | Dpse | Dvir | Dwil | Dyak | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Canonical effectors | ATT | 10 | 4 | 1 | 0 | 0 | 0 | 0 | 3 | 4 | 3 | 4 | 4 | 3 | 4 |
| DEF | 5 | 0 | 4 | 1 | 2 | 1 | 1 | 1 | 1 | 2 | 1 | 2 | 1 | 1 | |
| DIPT | 4 | 0 | 1 | 1 | 1 | 1 | 1 | 3 | 3 | 5 | 4 | 4 | 4 | 3 | |
| CEC | 12 | 2 | 9 | 3 | 4 | 3 | 4 | 3 | 5 | 1 | 5 | 5 | 4 | 5 | |
| LYS | 32 | 4 | 7 | 3 | 8 | 4 | 5 | 13 | 13 | 13 | 18 | 14 | 12 | 12 | |
| Noncanonical effectors | TPX | 6 | 6 | 5 | 5 | 5 | 5 | 5 | 8 | 8 | 6 | 6 | 6 | 9 | 7 |
| PPO | 23 | 4 | 25 | 11 | 20 | 9 | 22 | 9 | 10 | 8 | 8 | 8 | 8 | 11 | |
| GPX | 1 | 0 | 3 | 3 | 3 | 3 | 4 | 3 | 2 | 1 | 2 | 1 | 2 | 2 | |
| HPX | 12 | 8 | 19 | 17 | 19 | 14 | 13 | 10 | 10 | 10 | 11 | 10 | 10 | 10 | |
| TSF | 6 | 3 | 5 | 3 | 4 | 4 | 4 | 3 | 3 | 3 | 4 | 3 | 3 | 3 | |
| Canonical recognition | NIM | 23 | 10 | 8 | 10 | 9 | 10 | 15 | 18 | 17 | 19 | 19 | 19 | 15 | 18 |
| PGRP | 17 | 4 | 10 | 8 | 7 | 7 | 10 | 13 | 13 | 14 | 15 | 13 | 13 | 15 | |
| BGBP | 3 | 3 | 7 | 6 | 7 | 5 | 13 | 6 | 7 | 6 | 8 | 6 | 10 | 8 | |
| TEP | 22 | 4 | 8 | 12 | 15 | 7 | 11 | 5 | 6 | 7 | 5 | 6 | 5 | 6 | |
| Other recognition | CTL | 41 | 11 | 43 | 14 | 29 | 25 | 54 | 36 | 38 | 24 | 32 | 29 | 27 | 42 |
| FREP | 38 | 7 | 34 | 22 | 50 | 27 | 93 | 42 | 14 | 22 | 31 | 34 | 35 | 15 | |
| GALE | 13 | 8 | 12 | 7 | 10 | 8 | 9 | 6 | 6 | 6 | 7 | 7 | 6 | 7 | |
| IGSF | 1 | 1 | 0 | 0 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 0 | 2 | |
| MD2L | 12 | 5 | 26 | 12 | 16 | 10 | 21 | 8 | 8 | 8 | 7 | 8 | 9 | 8 | |
| SRCA | 3 | 2 | 2 | 3 | 2 | 2 | 2 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | |
| SRCB | 18 | 11 | 13 | 14 | 14 | 15 | 16 | 14 | 14 | 15 | 14 | 15 | 15 | 16 | |
| SRCC | 8 | 4 | 5 | 7 | 6 | 5 | 8 | 6 | 9 | 6 | 6 | 8 | 6 | 9 | |
| Signaling and modulation | NFKB | 7 | 8 | 4 | 4 | 3 | 3 | 8 | 3 | 4 | 4 | 4 | 4 | 4 | 3 |
| SPRN | 26 | 14 | 26 | 19 | 18 | 16 | 51 | 31 | 30 | 21 | 28 | 19 | 24 | 33 | |
| TLL | 7 | 8 | 15 | 9 | 14 | 8 | 13 | 11 | 10 | 8 | 15 | 9 | 15 | 13 | |
| CLIPA | 11 | 11 | 28 | 20 | 22 | 11 | 19 | 17 | 21 | 9 | 16 | 13 | 11 | 24 | |
| CLIPB | 27 | 19 | 99 | 36 | 82 | 37 | 119 | 41 | 80 | 22 | 57 | 30 | 30 | 74 | |
| CLIPC | 25 | 22 | 57 | 30 | 72 | 39 | 81 | 28 | 22 | 23 | 24 | 24 | 30 | 20 | |
| CLIPD | 166 | 66 | 182 | 103 | 150 | 79 | 187 | 139 | 132 | 115 | 116 | 130 | 141 | 145 | |
| CLIPE | 2 | 3 | 6 | 2 | 4 | 3 | 5 | 3 | 2 | 2 | 1 | 2 | 2 | 5 |
Note.—In each row, the highest value is italicized.
Species abbreviations: Mdom, M. domestica; Gmor, G. morsitans; Aaeg, A. aegypti; Adar, A. darlingi; Agam, A. gambiae; Aste, A. stephensi; Cqui, C. quinquefasciastus; Dana, D. ananassae; Dmel, D. melanogaster; Dmoj, D. mojavensis; Dpse, D. pseudoobscura; Dvir, D. virilis; Dwil, D. willistoni; Dyak, D. yakuba.