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. 2017 Apr 11;5(4):apps.1700005. doi: 10.3732/apps.1700005

Table 1.

Characteristics of 46 microsatellite loci developed for Smilax aspera.

Locus Primer sequences (5′–3′) Repeat motif Allele size (bp) Ta (°C) A GenBank accession no.
S003 F: TCCCCATTTCTCCTCACTTG (TTTTC)5 100 53 4 KY358008
R: GCCACTACAACAACTTAGTGATTTTG
S004 F: GCCCACTTTCATTGCCTTTA (TCA)8 111 53 15 KY358009
R: AATGTGGGCGTGGTAAAAAG
S006 F: AAAGGGGATGAGGAGAAGGA (AAG)7 133 59 9 KY358010
R: AAACCACCATGACTCCTCCA
S007 F: CTGCTTCCAGACAGAGGAGG (TGGTT)5 139 59 8 KY358011
R: ACACTTCTTGGGTTGGCATC
S009 F: GAGTGAGGAGGGAGGAGCTT (TC)33 159 58 23 KY358012
R: CCGGAGAACCAGATGAAGAC
S016 F: AGAACTTGAGGGTGTGTGGG (T)10(TC)6 230 58 16 KY358013
R: TTCATGCATACTTTTGCCGA
S028 F: TAATCCCTCGCGAAATCAAG (GATC)5 120 53 3 KY358014
R: CCCAAAATCGATCGAGAAAA
S030 F: AAGCCAAGCAAACCCATTTA (GA)14 126 59 15 KY358015
R: CACCCTCTGACTCCGAAGAG
S034 F: CAGGGAGTTGGTCCTCAAAA (T)21 154 59 12 KY358016
R: ATGGTTGCAAAGAAACACCC
S046 F: CTAAGGCGATATCCTCAGCG (GTGGGC)5 226 59 7 KY358017
R: CAGCCACTTGGTATCCACCT
S049 F: AAGGGACATTTTTGTTCCCC (TAAA)6 248 59 4 KY358018
R: GCAAGTTAAGCAACACAGTTAAGG
S052 F: AGATCCACAGTTCCACCTGC (AAACTAT)10 266 59 8 KY358019
R: GCGCTTGATGTGCTCAAATA
S053 F: GATCTGGGTTTCTCGTTGGA (CTGGGA)5 269 59 6 KY358020
R: GGCCATTTGGAAGAGACTGA
S057 F: GAGATTTCCAGCAAAACCCA (CGAG)4 291 58 5 KY358021
R: AGTTTCTGGGCCCTCTGTCT
S060 F: CCATGGTGGACGACTTTCTT (GAT)6 311 59 3 KY358022
R: GCATGGAAACGCCTATGATT
S062 F: CTTGGCAACACCAATCAATG (TCCT)7 326 59 9 KY358023
R: TGCACGTGATCACTGGATCT
S063 F: CATTTCGATGAATCGTGTGG (CATCT)5(TC)23 332 59 21 KY358024
R: GTAGGGTTCGGTGCTGATGT
S066 F: TCGATTTCCACCCATTTCTC (CGCCAC)5 354 59 10 KY358025
R: GCTGAGTACTTGAGGGCGTC
S072 F: CAGTGCCTCTTCCTTGCTTC (TGG)5(GTGGCC)3 402 59 16 KY358026
R: TATACCCAGGTCTCCGAACG
S081 F: ATTTCGCCACTACCTTGCAC (CCCT)6 103 50 8 KY358027
R: ATCCTTCATTCAATGCCGAG
S083 F: GGACTGGATTCCGTTTTGCT (CCTCTA)4 105 50 4 KY358028
R: AGCCAGGACATTGCCTTTAC
S085 F: TGTTGGGTGAGCAAAACAAA (T)16 109 53 16 KY358029
R: ACCTTTCTCCCCACTTGCTT
S086 F: TAATTGGCTTCGGATTGACC (AG)9 112 50 28 KY358030
R: GGAATTCGTTCTTCCCCATT
S087 F: GGACTTGGTCATCAGGTCGT (TC)12TAGGTC(TCGGA)3 116 55 21 KY358031
R: TTGTGCAACCAAACTCCAGA
S089 F: CACAAGCTTGATGAGGTCCA (TGGTT)3 125 53 7 KY358032
R: AAGGACACGGACCATGAAAG
S090 F: AGCAGCCTTGGGCTTATTTT (TAAAC)3 132 53 5 KY358033
R: TTCTGTTGTGCGGATATTGG
S093 F: GAAGGGAGGGAGGAGAAGTG (AG)12 135 53 7 KY358034
R: CCGTTTAAAGATCCCGTCAA
S094 F: TGCTGGAAGAACAACGACTG (GCTGTT)4 143 50 4 KY358035
R: GTTACCGTTGGTCACCTGCT
S096 F: TGGATTCATGTGTTTGGCTG (A)22 145 55 8 KY358036
R: AAATCAGGCCTCCTCATTGTAA
S097 F: CACCTTCTCCTCCTCTTCCC (TTC)8 148 51 9 KY358037
R: TCATCTCCCCTCTTCTTCCC
S100 F: CTGGAGATCTCACCCTCTCG (CCCTCT)3 155 50 6 KY358038
R: CAATGAGACAGTCCGGATCA
S104 F: AATTGGGATTTGATGATCGC (TC)17 168 53 11 KY358039
R: CCAAAAACCCACGAGAGAAA
S105 F: GCTGGTACTTCTTCTTGCCG (GGCGGA)3 168 55 6 KY358040
R: ACTTCGAGAACAGCCTCCAA
S110 F: TCACGTGTGAGGTTCTAGCG (AG)7AA(AG)14 181 59 3 KY358041
R: TGGCGTCCCAGTGAGTGT
S113 F: ACGTAACTCTCGGTGCCATC (AG)11 185 55 5 KY358042
R: CGTGTGGAAGGGAGGTAAAA
S116 F: ATGACATCCCCTCCCTCTCT (TC)9 191 55 15 KY358043
R: CCCCACCATTGTCTTGAAGT
S120 F: AGGCCAAGACTATCAGCGAA (GTG)7 204 53 3 KY358045
R: TCTTTCTTGCTCCAGGCATT
S121 F: GGGAACACTACCTTCTGCCA (CGATCT)4 211 61 3 KY358046
R: TTGAGATCTGGGGAGGTTTG
S122 F: TGTGGTGCTTGATGAGCTTC (CTG)7 214 50 3 KY358047
R: CGTTGCACAGAGCGAATAAA
S126 F: CTTCTCCGCATACCACCTGT (CT)10 227 53 6 KY358048
R: GCTCTGCGTCTGTTCCATTT
S130 F: ATGCTTGACACGCTTGATTG (TGC)8 247 53 12 KY358049
R: AGCTGCTTGGACAGCAAAAT
S132 F: ACGGTCTCTTTCAAGAAGGG (AG)12 251 55 11 KY358050
R: GATGAAGGAGAACGCAAAGC
S134 F: GAGAGCCCACGTGAAGTGAT (GA)15 258 55 27 KY358051
R: CCCCATAAATGTGGGAGATG
S139 F: GCAAAGCTCTTCTCCTCCCT (TTC)5 282 50 7 KY358052
R: CTGGATGGCTTTGGATAGGA
S144 F: GACCCCATGGATACGAGAAC (GGGGTC)3 306 55 4 KY358053
R: CTAAACCCGACTCCCCAAAT
S148 F: AGAACCAGCAGAGCGACATT (CAG)7 350 55 4 KY358054
R: TTGCGTCAGCTTACCCTTCT

Note: A = number of alleles per locus; Ta = optimized annealing temperature.