TABLE 2.
Isolate | Isolation date (yr.mo.day) | Isolation source | Countrya | STb | Allele nucleotide sequence no.c
|
SVR
|
|||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
aspA | glnA | gltA | glyA | pgm | tkt | uncA | Allele no. | Peptide no. | |||||
2 | 2003.09.15 | Human stool | UK | 868 | 81 | 104 | 81 | 113 | 143 | 119 | 67 | 294 | 98 |
12 | 2003.09.18 | Human stool | UK (Greece)d | 825 | 33 | 39 | 30 | 82 | 113 | 47 | 17 | 336 | 106 |
18 | 2003.09.22 | Human stool | UK (Malawi)d | 832 | 33 | 39 | 30 | 79 | 113 | 43 | 17 | 243 | 1 |
23 | 2003.09.26 | Human stool | UK | 826 | 33 | 39 | 30 | 114 | 104 | 35 | 17 | 256 | 97 |
26 | 2003.09.29 | Human stool | UK | 827 | 33 | 39 | 30 | 82 | 104 | 56 | 17 | 255 | 1 |
27 | 2003.09.29 | Human stool | UK (Pakistan)d | 872 | 33 | 39 | 30 | 82 | 113 | 44 | 17 | 30 | 11 |
29 | 2003.09.29 | Human stool | UK | 825 | 33 | 39 | 30 | 82 | 113 | 47 | 17 | 253 | 1 |
40 | 2003.10.06 | Human stool | UK (Mexico)d | 825 | 33 | 39 | 30 | 82 | 113 | 47 | 17 | 292 | 1 |
44 | 2003.10.08 | Human stool | UK (Israel)d | 828 | 33 | 39 | 30 | 82 | 104 | 43 | 17 | 271 | 10 |
47 | 2003.10.09 | Human stool | UK | 829 | 33 | 39 | 30 | 82 | 113 | 43 | 17 | 16 | 12 |
48 | 2003.10.09 | Human stool | UK | 827 | 33 | 39 | 30 | 82 | 104 | 56 | 17 | 255 | 1 |
50 | 2003.10.10 | Human stool | UK | 830 | 33 | 39 | 30 | 79 | 104 | 47 | 17 | 272 | 1 |
65 | 2003.10.20 | Human stool | UK | 831 | 33 | 39 | 66 | 82 | 104 | 44 | 41 | 17 | 11 |
71 | 2003.10.24 | Human stool | UK | 832 | 33 | 39 | 30 | 79 | 113 | 43 | 17 | 66 | 1 |
90 | 2003.11.05 | Human stool | UK | 827 | 33 | 39 | 30 | 82 | 104 | 56 | 17 | 255 | 1 |
125 | 2003.11.24 | Human stool | UK | 860 | 33 | 39 | 30 | 79 | 113 | 47 | 17 | 311 | 1 |
138 | 2003.12.01 | Human stool | UK | 825 | 33 | 39 | 30 | 82 | 113 | 47 | 17 | 16 | 12 |
142 | 2003.12.03 | Human stool | UK | 866 | 33 | 110 | 30 | 116 | 104 | 47 | 41 | 318 | 8 |
143 | 2003.12.04 | Human stool | UK | 830 | 33 | 39 | 30 | 79 | 104 | 47 | 17 | 17 | 11 |
146 | 2003.12.09 | Human stool | UK | 867 | 33 | 38 | 30 | 115 | 104 | 85 | 17 | 17 | 11 |
219 | 2003.01.30 | Human stool | UK | 902 | 33 | 39 | 30 | 79 | 104 | 43 | 17 | 66 | 1 |
1c We | 2003.01.07 | Chicken anal swab | UK | 854 | 33 | 38 | 30 | 82 | 104 | 43 | 17 | 319 | 15 |
2c W | 2003.01.07 | Chicken anal swab | UK | 854 | 33 | 38 | 30 | 82 | 104 | 43 | 17 | 319 | 15 |
3c W | 2003.01.14 | Chicken anal swab | UK | 854 | 33 | 38 | 30 | 82 | 104 | 43 | 17 | 319 | 15 |
4c W | 2003.01.21 | Chicken anal swab | UK | 854 | 33 | 38 | 30 | 82 | 104 | 43 | 17 | 319 | 15 |
5c Nf | 2003.03.14 | Chicken anal swab | UK | 854 | 33 | 38 | 30 | 82 | 104 | 43 | 17 | 319 | 15 |
6c W | 2003.02.21 | Chicken anal swab | UK | 854 | 33 | 38 | 30 | 82 | 104 | 43 | 17 | 319 | 15 |
7c W | 2003.02.28 | Chicken anal swab | UK | 855 | 33 | 39 | 30 | 79 | 104 | 35 | 17 | 66 | 1 |
8c W | 2003.04.04 | Chicken anal swab | UK | 855 | 33 | 39 | 30 | 79 | 104 | 35 | 17 | 66 | 1 |
9c N | 2003.04.11 | Chicken anal swab | UK | 855 | 33 | 39 | 30 | 79 | 104 | 35 | 17 | 66 | 1 |
10c N | 2003.04.25 | Chicken anal swab | UK | 855 | 33 | 39 | 30 | 79 | 104 | 35 | 17 | 66 | 1 |
11c W | 2003.05.02 | Chicken anal swab | UK | 855 | 33 | 39 | 30 | 79 | 104 | 35 | 17 | 66 | 1 |
12c W | 2003.05.09 | Chicken anal swab | UK | 855 | 33 | 39 | 30 | 79 | 104 | 35 | 17 | 66 | 1 |
13c W | 2003.05.16 | Chicken anal swab | UK | 855 | 33 | 39 | 30 | 79 | 104 | 35 | 17 | 66 | 1 |
14c N | 2003.05.23 | Chicken anal swab | UK | 855 | 33 | 39 | 30 | 79 | 104 | 35 | 17 | 66 | 1 |
15c N | 2003.05.30 | Chicken anal swab | UK | 855 | 33 | 39 | 30 | 79 | 104 | 35 | 17 | 66 | 1 |
16c N | 2003.06.06 | Chicken anal swab | UK | 855 | 33 | 39 | 30 | 79 | 104 | 35 | 17 | 66 | 1 |
17c W | 2003.06.13 | Chicken anal swab | UK | 855 | 33 | 39 | 30 | 79 | 104 | 35 | 17 | 66 | 1 |
18c W | 2003.06.20 | Chicken anal swab | UK | 855 | 33 | 39 | 30 | 79 | 104 | 35 | 17 | 66 | 1 |
19c W | 2003.06.21 | Chicken anal swab | UK | 854 | 33 | 38 | 30 | 82 | 104 | 43 | 17 | 319 | 15 |
20c N | 2003.07.03 | Chicken anal swab | UK | 855 | 33 | 39 | 30 | 79 | 104 | 35 | 17 | 66 | 1 |
21c N | 2003.07.11 | Chicken anal swab | UK | 855 | 33 | 39 | 30 | 79 | 104 | 35 | 17 | 191 | 33 |
22c N | 2003.07.18 | Chicken anal swab | UK | 855 | 33 | 39 | 30 | 79 | 104 | 35 | 17 | 66 | 1 |
23c W | 2003.07.25 | Chicken anal swab | UK | 871 | 33 | 108 | 30 | 79 | 104 | 85 | 17 | 30 | 11 |
24c W | 2008.08.01 | Chicken anal swab | UK | 855 | 33 | 39 | 30 | 79 | 104 | 35 | 17 | 191 | 11 |
P1 W | 2004.02.02 | Pig feces | UK | 886 | 53 | 38 | 83 | 82 | 104 | 43 | 17 | 325 | 15 |
P3 W | 2004.02.02 | Pig feces | UK | 887 | 33 | 38 | 30 | 82 | 104 | 85 | 68 | 291 | 1 |
P4 W | 2004.02.02 | Pig feces | UK | 886 | 53 | 38 | 83 | 82 | 104 | 43 | 17 | 325 | 15 |
P5 W | 2004.02.02 | Pig feces | UK | 886 | 53 | 38 | 83 | 82 | 104 | 43 | 17 | 325 | 15 |
P6 W | 2004.02.02 | Pig feces | UK | 888 | 32 | 39 | 30 | 82 | 104 | 44 | 36 | 27 | 25 |
P7 W | 2004.02.02 | Pig feces | UK | 886 | 53 | 38 | 83 | 82 | 104 | 43 | 17 | 325 | 15 |
P9 W | 2004.02.02 | Pig feces | UK | 888 | 32 | 39 | 30 | 82 | 104 | 44 | 36 | 27 | 25 |
P10 W | 2004.02.02 | Pig feces | UK | 887 | 33 | 38 | 30 | 82 | 104 | 85 | 68 | 291 | 1 |
Penner 14 | Human stool (12526)g | Belgium | 889 | 33 | 39 | 30 | 82 | 113 | 47 | 41 | 9 | 10 | |
Penner 25 | Sheep feces (12529) | Canada | 890 | 33 | 38 | 30 | 82 | 104 | 35 | 36 | 13 | 21 | |
Penner 28 | Marmoset feces (12531) | NK | 891 | 33 | 39 | 30 | 118 | 104 | 64 | 17 | 16 | 12 | |
Penner 30 | Human (12532) | Canada | 892 | 33 | 38 | 30 | 115 | 113 | 43 | 17 | 17 | 11 | |
Penner 34 | Pig (12533) | NK | 893 | 33 | 39 | 30 | 78 | 104 | 35 | 36 | 20 | 25 | |
Penner 39 | Turkey (12534) | USA | 894 | 33 | 39 | 65 | 82 | 113 | 47 | 13 | 23 | 1 | |
Penner 46 | Human (12569) | Canada | 895 | 82 | 38 | 30 | 82 | 104 | 35 | 36 | 17 | 11 | |
Penner 47 | NK (12535) | NK | 896 | 33 | 38 | 30 | 78 | 104 | 122 | 17 | 17 | 11 | |
Penner 48 | NK (12536) | NK | 897 | 53 | 39 | 44 | 82 | 118 | 44 | 36 | 27 | 25 | |
Penner 49 | Human (12570) | USA | 898 | 32 | 42 | 30 | 82 | 104 | 43 | 17 | 28 | 10 | |
Penner 51 | NK (12550) | NK | 832 | 33 | 39 | 30 | 79 | 113 | 43 | 17 | 29 | 28 | |
Penner 54 | NK (12551) | NK | 903 | 33 | 39 | 32 | 79 | 104 | 47 | 17 | 30 | 11 | |
Penner 56 | Human (12567) | Israel | 899 | 33 | 39 | 30 | 82 | 113 | 35 | 17 | 16 | 12 | |
Penner 59 | Pig (12568) | NK | 900 | 32 | 38 | 30 | 82 | 152 | 35 | 17 | 13 | 21 | |
Penner 61 | NK (12570) | NK | 901 | 33 | 39 | 30 | 79 | 104 | 43 | 41 | 33 | 1 |
Abbreviations: UK, United Kingdom; USA, United States; NK, not known.
ST numbers are unique numbers assigned to the numbers making up the aspA glnA gltA glyA pgm tkt uncA allelic profile.
Allele nucleotide sequence number in the MLST database (http://pubmlst.org/campylobacter/).
Illness occurred in the United Kingdom after recent travel to the country indicated.
W, Oxford University Farm, Wytham, Oxford, United Kingdom.
N, Northmoor Trust site, Oxfordshire, United Kingdom.
The numbers in parentheses indicate the National Collection of Type Culture accession numbers for the C. coli reference isolates of the Penner serotyping scheme.