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. 2005 Jan;15(1):78–91. doi: 10.1101/gr.2908205

Table 1.

New loci related to previously reported miRNA precursors

Precursor loci (Rfam ID)a Intergenic regionb miRNA sequencec
MIR157a At1g66790 graphic file with name 15_1_78_t1_1.jpg
MIR157new (MIR156h) At5g55840 UUGACAGAAGAAAGAGAGCAC
MIR158 At1g55600 graphic file with name 15_1_78_t1_2.jpg
MIR158new (MIR158a) At3g10750 CCAAAUGUAGACAAAGCA
MIR159a At1g18080 graphic file with name 15_1_78_t1_3.jpg
MIR159new At2g46260 UUGGAUUGAAGGGAGCUCC
MIR164a At2g47590 UGGAGAAGCAGGGCACGUGC
MIR164new (MIR164c) At5g27810 UGGAGAAGCAGGGCACGUGC
MIR164new At3g01210 UUCGAGAAGCAGGGCACG
MIR167a At3g22890 graphic file with name 15_1_78_t1_4.jpg
MIR167new (MIR167c) At3g04770 AAGCUGCCAGCAUGAUCU
MIR169 At3g13410 graphic file with name 15_1_78_t1_5.jpg
MIR169new (MIR169b) At5g24830 AGCCAAGGAUGACUUGCC
MIR169new (MIR169d) At1g53690 3.1 kb AGCCAAGGAUGACUUGCC
MIR169new (MIR169e) At1g53690 1.1 kb AGCCAAGGAUGACUUGCC
MIR169new (MIR169f) At3g14390 AGCCAAGGAUGACUUGCC
MIR169new (MIR169g) At4g21600 AGCCAAGGAUGACUUGCC
MIR169new (MIR169h) At1g19380 AGCCAAGGAUGACUUGCCUG
MIR169new (MIR169i) At3g26820 9.0 kb AGCCAAGGAUGACUUGCCUG
MIR169new (MIR169j) At3g26820 8.6 kb AGCCAAGGAUGACUUGCCUG
MIR169new (MIR169k) At3g26820 5.4 kb AGCCAAGGAUGACUUGCCUG
MIR169new (MIR169l) At3g26820 5.1 kb AGCCAAGGAUGACUUGCCUG
MIR169new (MIR169m) At3g26820 2.8 kb AGCCAAGGAUGACUUGCCUG
MIR169new (MIR169n) At3g26820 2.4 kb AGCCAAGGAUGACUUGCCUG
MIR170 At5g66050 UGAUUGAGCCGUGUCAAUAUC
MIR170new (MIR171b) At1g62040 UGAUUGAGCCGUGCCAAUAUC
MIR170new (MIR171c) At1g11740 GAUUGAGCCGUGCCAAUAUC
MIR171 AT3g51380 UGAUUGAGCCGCGCCAAUAUC
MIR172a1 At2g28060 graphic file with name 15_1_78_t1_6.jpg
MIR172new (MIR172d) At3g55520 UGAGAAUCUUGAUGAUGCUGCAG
a

miRNA name as registered in Rfam (http://www.sanger.ac.uk/Software/Rfam/mirna/). Loci that were found by findMiRNA pior to recent reports are indicated with a superscript `new'

b

Intergenic regions North of indicated AGI pseudogenes that contain the precursor locus (loci). Each MIR169 precursor locus of intergenic region At2g26820 are distinguished by their locations on the 10.7-kb intergenic region North of At2g26820 relative to the ATG start codon of At2g26820 in kilobase pairs

c

Bolded nucleotides indicate the known miRNA sequences. Gray-bolded nucleotides were not indicated by the findMiRNA algorithm