Table 3. Disordered protein complex test set.
| Disordered protein name | Receptor protein name | Bound | Unbound | DisProt ID or ref. | |||
|---|---|---|---|---|---|---|---|
| Receptor PDB ID | Ligand chain | L | Receptor PDB ID | Pocket RMSD (Å) | |||
| Peroxisomal targeting signal 1 receptor | PEX14 | 2w84A | B | 20 | 5aonAa | 1.19 | DP00472 |
| CDK inhibitor 1 | Proliferating cell nuclear antigen | 1axcA | B | 22 | 1vymA | 1.86 | DP00016 |
| Alpha trans-inducing protein | Transcriptional coactivator PC4 | 2pheAB | C | 26 | 1pcfAB | 1.87 | DP00087 |
| Protease A inhibitor 3 | Proteinase A | 1g0vA | B | 31 | 1fmxA | 3.80 | DP00179 |
| Nuclear factor erythroid 2-related factor 2 | Keap1 | 3wn7A | B | 35 | 1x2jA | 0.90 | DP00968 |
| Protein phosphatase 1 regulatory subunit 12A | PP-1B | 1s70A | B | 39 | 4ut2A | 0.92 | DP00218 |
| Protein phosphatase inhibitor 2 | PP-1G | 2o8gA | I | 40 | 1jk7A | 1.45 | DP00815 |
| Outer membrane virulence protein YopE | YopE chaperone SycE | 1l2wAB | I | 69 | 1jyaAB | 1.27 | [42] |
a: template-based model using MODELLER [43] (5aonA was used as the template, which has 46.9% sequence identity to 2w84A).