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. Author manuscript; available in PMC: 2018 Jun 5.
Published in final edited form as: J Comput Chem. 2016 Oct 26;38(15):1238–1251. doi: 10.1002/jcc.24522

Table 1.

Experimental data for the studied inhibitors of both ACK1 and p38 MAP kinase.42,56,58,59,34,35,41,57 Included are the Ki values for the parent and modified compounds and the corresponding free energy differences, ΔΔG, in kcal/mol.

Compound/Transformation Ki (nM) ΔΔG exp
ACK1 Inhibitors L1, 1➔2 (H to F) 3 → 26 1.28
L1, 2➔3 (F to Methyl) 26 → 2500 2.71
L1, 1➔3 (H to Methyl) 3 → 2500 3.98
L2, 4➔5 (2H to 2Cl) 4000 → 7 −3.76
L3,6➔7 (O to NH) 10 → 2 −0.95
L4, 8➔9 (O to NH) 13 → 3 −0.87
L5, 10➔11 (CH2 to O) 5 → 13 0.57
L5, 10➔12 (O to NH) 5 → 6 0.11
p38 MAP kinase Inhibitors L6, 14➔15 (O to S) 0.3→2 1.12
L6, 14➔16 (O to NH) 0.3→16 2.36
L7, 17➔18 (Ethyl to Isopropyl) 5.5→680 2.85
L8, 19➔20 (H to Methyl) 42→1.1 −2.16
L9, 21➔22 (O to CH2) 10→40 0.82
L10, 23➔24 (O to CH2) 15→42 0.61
L10, 23➔25 (O to S) 15→111 1.19
L11, 26➔27 (H to F) 106→14 −1.20
L12, 28➔29 (H to Methyl) >2500→12 −3.16
L12, 28➔30 (H to F) >2500→460 −1.00
L12, 28➔31 (H to Cl) >2500→25 −2.77
L12, 30➔31 (F to Cl) 25→460 −1.72
L13, 32➔33 (Methyl to Ethyl) 260→4.25 −2.44
L14, (Methyl R➔S) 5→50 1.36
L15, (Methyl R➔S) 11→2 −1.01