Table 1.
General parameters in co-expression networks.
|
C. reinhardtii |
P. patens |
S. lycopersicum |
A. thaliana |
|||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Full | Neigh | Ortho | Full | Neigh | Ortho | Full | Neigh | Ortho | Full | Neigh | Ortho | |
| Nodes | 8652 | 48 | 658 | 8564 | 448 | 1503 | 7851 | 1314 | 2885 | 5663 | 2070 | 2949 |
| Edges | 145903 | 78 | 1173 | 295317 | 15078 | 19828 | 287409 | 153396 | 169171 | 593730 | 460951 | 512042 |
| Average degree | 33.73 | 3.25 | 3.57 | 68.97 | 67.31 | 26.38 | 73.22 | 233.48 | 117.28 | 209.69 | 445.36 | 347.26 |
| Average shortest path length | 7.37 | 1.91 | 8.71 | 13.11 | 1.39 | 12.01 | 13.78 | 1.67 | 5.63 | 4.28 | 2.15 | 3.09 |
| Diameter | 23 | 4 | 24 | 46 | 4 | 41 | 44 | 6 | 25 | 20 | 9 | 12 |
Parameters of networks and subnetworks used in this study. Full, full gene co-expression network; Neigh, first neighbors subnetwork; Ortho, orthologs subnetwork; C. reinhardtii, Chlamydomonas reinhardtii; P. patens, Physcomitrella patens; S. lycopersicum, Solanum lycopersicum; A. thaliana, Arabidopsis thaliana.