Table 2.
Summary of significant SNPs detected by GWAS.
| Traits | SNP markers | P-value | Chromosome | IRGSP.v4 position | IRGSP 1.0 position | Known loci |
|---|---|---|---|---|---|---|
| NCL | seq-rs1474 | 4.03E-04 | 3 | 7000314 | 6950989 | |
| NCL | seq-rs2895 | 5.50E-04 | 6 | 10197319 | 10198318 | |
| FCL | seq-rs408 | 2.66E-04 | 1 | 25073977 | 23417131 | |
| FCL | seq-rs583 | 3.25E-04 | 1 | 39044291 | 37288444 | Hsu and Tung, 2015 |
| FCL | seq-rs2699 | 4.75E-05 | 6 | 1178093 | 1179092 | |
| FCL | seq-rs2701 | 8.34E-05 | 6 | 1389722 | 1390721 | |
| FCL | seq-rs3121 | 3.75E-04 | 6 | 30915718 | 30038716 | |
| FCL | seq-rs3087 | 7.16E-04 | 6 | 28446724 | 27569722 | |
| FCL | seq-rs3210 | 5.70E-04 | 7 | 5014710 | 4982558 | Hsu and Tung, 2015 |
| FCL | seq-rs3583 | 6.81E-04 | 7 | 28544962 | 27884804 | qAG-7-2, Angaji et al., 2009; Hsu and Tung, 2015 |
| FCL | seq-rs3972 | 7.58E-04 | 8 | 24927836 | 24839831 | qAG-8-1, Angaji et al., 2009 |
| FCL | seq-rs4773 | 9.33E-04 | 11 | 4581585 | 4598375 | |
| FCL | seq-rs5125 | 9.81E-04 | 11 | 21084520 | 19256661 | qAG-11, Jiang et al., 2006; Angaji et al., 2009 |
| FTI | seq-rs2699 | 1.07E-05 | 6 | 1178093 | 1179092 | |
| FTI | seq-rs2701 | 4.70E-04 | 6 | 1389722 | 1390721 | |
| FTI | seq-rs2686 | 5.37E-04 | 6 | 534144 | 535143 | |
| FTI | seq-rs2683 | 9.91E-04 | 6 | 276836 | 277836 | |
| FTI | seq-rs3583 | 1.64E-04 | 7 | 28544962 | 27884804 | qAG-7-2, Angaji et al., 2009; Hsu and Tung, 2015 |
| FTI | seq-rs3210 | 4.30E-04 | 7 | 5014710 | 4982558 | Hsu and Tung, 2015 |
| FTI | seq-rs4216 | 4.88E-04 | 9 | 11439838 | 10874127 | qAG-9-2, Kretzschmar et al., 2015 |
| FTI | seq-rs4859 | 1.17E-04 | 11 | 7588747 | 7586818 | |
| FTI | seq-rs5125 | 9.96E-04 | 11 | 21084520 | 19256719 | qAG-11, Jiang et al., 2006; Angaji et al., 2009 |