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. 2017 Apr 25;6:e24463. doi: 10.7554/eLife.24463
Name Features Promoter/Vector Details
ERM-APEX2 C1(1-27)-APEX2-V5-Stop CMV/pLX304 Soybean APEX2 has four mutations relative to wild-type
ascorbate peroxidase: K14D, W41F, E112K, and A134P
(Lam et al., 2015).
C1(1-27) indicates the first 27 amino acids from rabbit
cytochrome P450 2C1
(Ahn et al., 1993): MDPVVVLGLCLSCLLLLSLW
KQSYGGG
V5: GKPIPNPLLGLDST
This lentiviral vector carries a blasticidin resistance marker.
APEX2-OMM Flag-APEX2-MAVS(510-540)-Stop CMV/pLX304 Flag: DYKDDDDK
MAVS(510-540) (Seth et al., 2005): RPSPGALWLQVAVTGVLVVT
LLVVLYRRRLH
This lentiviral vector carries a blasticidin resistance marker.
APEX2-NES Flag-APEX2-NES-Stop CMV/pLX304 NES: LQLPPLERLTLD
This lentiviral vector carries a blasticidin resistance marker.
SYNJ2BP-V5 SYNJ2BP-linker-V5-Stop CMV/pLX_TRC208 The SYNJ2BP gene was originally obtained as
SYNJ2BP-linker-V5 in pLX304 from the Broad Institute.
We made a CRISPR-resistant version and moved the
construct to this pLX_TRC208.
Linker: CPTFLYKVV
This lentiviral vector carries a hygromycin resistance marker.
mito-tagBFP mito-tagBFP-Stop CMV/pcDNA3 The tagBFP (blue fluorescent protein) gene was cloned
from pHR-SFFV-dCas9-BFP, a gift from Stanley Qi and
Jonathan Weissman (Addgene plasmid # 46910)
(Gilbert et al., 2013).
Mitochondrial matrix targeting sequence (‘mito’):
MLATRVFSLVGKRAISTSVCVR
V5-GFP-RRBP1 Calreticulin signal
peptide-V5-GFP-RRBP1-Stop
CMV/pcDNA4 HisMax GFP (green fluorescent protein)-RRBP1 in pcDNA4
HisMax was a gift from Alexander F. Palazzo
(University of Toronto) (Cui et al., 2012). The RRBP1 gene
is the full-length version with 54 decapeptide repeats
and the three amino acids after the decapeptide
repeat region.
V5-APEX2-NLS V5-APEX2-NLS-Stop CMV/pcDNA3 NLS: SRADPKKKRKVDPKKKRKVD
PKKKRKV
Flag-APEX2-NLS Flag-APEX2-NLS-Stop CMV/pcDNA3
Flag-APEX2-CAAX Flag-APEX2-CAAX-Stop CMV/pcDNA3 CAAX:
RSKLNPPDESGPGCMSCKCV
LS