Table 2.
Functionally characterized drought-related genes from rice previously reported in literature.
| Major categorya | Minor categoryb | Locus_id | Gene name | Gene symbol | Methodc | DOI referencesd |
|---|---|---|---|---|---|---|
| RTe | Drought | LOC_Os03g19590.1 | Phytochrome B | phyB | M | 10.1007/s11103-011-9860-3 |
| RT | Drought | LOC_Os06g45140.1 | Basic leucine zipper 52 | OsbZIP52/RISBZ5 | OX | 10.1007/s00425-011-1564-z |
| RT | Drought | LOC_Os03g18360.1 | ETHYLENE OVERPRODUCER 1-like | OsETOL1 | KD OX | 10.1111/tpj.12508 |
| RT | Drought | LOC_Os05g44210.1 | Trehalose-6-phosphate synthase1 | OsTPS1 | OX | 10.1007/s00425-011-1458-0 |
| RT | Drought | LOC_Os05g10670.1 | Tandem zinc finger 1 | OsTZF1 | KD OX | 10.1104/pp.112.205385 |
| RT | Drought | LOC_Os03g16040.1 | Small heat-shock protein17.7 | sHSP17.7 | OX | 10.1007/s00299-007-0470-0 |
| RT | Salinity | LOC_Os11g02240.1 | Calcineurin B-like protein-interacting protein kinase15 | OsCIPK15 | OX | 10.1104/pp.107.101295 |
| RT | Salinity | LOC_Os08g03290.1 | Cytosolic GAPDH protein 3 | OsGAPC3 | OX | 10.1007/s11240-011-9950-6 |
| RT | Salinity | LOC_Os08g09250.1 | Glyoxalase1 | OsGLY1-11.2 | Others | 10.1111/tpj.12521 |
| RT | Salinity | LOC_Os05g47446.1 | Programmed cell death 5 | OsPDCD5 | KD | 10.1007/s11032-012-9793-9 |
| RT | Salinity | LOC_Os01g07760.1 | Phospholipase Dα1 | OsPLDα1 | KD | 10.1111/j.1744-7909.2010.01021.x |
| RT | Salinity | LOC_Os05g44210.1 | Trehalose-6-phosphate synthase1 | OsTPS1 | OX | 10.1007/s00425-011-1458-0 |
| RT | Salinity | LOC_Os05g10670.1 | Tandem zinc finger 1 | OsTZF1 | KD OX | 10.1104/pp.112.205385 |
| RT | Cold | LOC_Os06g45140.1 | Basic leucine zipper 52 | OsbZIP52/RISBZ5 | OX | 10.1007/s00425-011-1564-z |
| RT | Cold | LOC_Os05g04700.1 | OsLti6b | OsLti6b | OX | 10.1007/s00299-006-0297-0 |
| RT | Cold | LOC_Os05g44210.1 | Trehalose-6-phosphate synthase1 | OsTPS1 | OX | 10.1007/s00425-011-1458-0 |
| RT | Cold | LOC_Os03g45400.1 | Virescent-1 | v(1) | M | 10.1111/j.1365-313X.2011.04755.x |
| RT | Submergency | LOC_Os03g18360.1 | ETHYLENE OVERPRODUCER 1-like | OsETOL1 | KD OX | 10.1111/tpj.12508 |
| RT | Blast | LOC_Os05g31140.1 | β-glucanase1 | Gns1 | OX | 10.1023/A:1020714426540 |
| RT | Blast | LOC_Os12g03040.1 | ONAC131 | ONAC131 | KD | 10.1007/s11033-012-2040-y |
| RT | Blast | LOC_Os12g03040.1 | ONAC131 | ONAC131 | KD | 10.1007/s11103-012-9981-3 |
| RT | Blast | LOC_Os03g19590.1 | Phytochromeb | phyB | M | 10.1093/mp/ssr005 |
| RT | Blast | LOC_Os01g49290.1 | Receptor for Activated C-Kinase 1A | RACK1A | OX | 10.1105/tpc.107.054395 |
| RT | Soil stress | LOC_Os05g03780.1 | Metal Tolerance Protein 1 | OsMTP1 | KD OX | 10.1007/s00299-011-1140-9 |
| RT | Soil stress | LOC_Os07g15460.1 | Natural resistance-associated macrophage protein1 | OsNRAMP1 | OX | 10.1093/jxb/err136 |
| RT | Soil stress | LOC_Os08g10630.1 | Zn-regulated transporter, iron (Fe)-regulated transporter-like protein4 | OsZIP4 | OX | 10.1093/jxb/erm147 |
| RT | Other stress | LOC_Os08g09250.1 | Glyoxalase1 | OsGLY1-11.2 | Others | 10.1111/tpj.12521 |
| RT | Other stress | LOC_Os09g20284.1 | Polyamine oxidases 7 | OsPAO7 | Others | 10.1093/pcp/pcu047 |
| RT | Other stress | LOC_Os03g16040.1 | Small heat-shock protein17.7 | sHSP17.7 | OX | 10.1023/B:MOLB.0000018764.30795.c1 |
| MTf | Dwarf | LOC_Os06g02019.1 | Ent-kaurenoic acid oxidase | oskao | M | 10.1104/pp.103.033696 |
| MT | Dwarf | LOC_Os06g06050.1 | Dwarf 3 | d3 | M | 10.1093/pcp/pci022 |
| MT | Dwarf | LOC_Os06g12400.1 | Rice homeobox gene 1a | HOX1a | OX | 10.1111/j.1744-7909.2011.01075.x |
| MT | Dwarf | LOC_Os04g01590.1 | OsARG | OsARG | M | 10.1111/j.1365-313x.2012.05122.x |
| MT | Dwarf | LOC_Os01g03510.1 | Actin-interacting protein 1 | AIP1 | KD OX | 10.1111/tpj.12065 |
| MT | Root | LOC_Os07g48560.1 | WUSCHEL-related Homeobox 11 | wox11 | M | 10.1105/tpc.108.061655 |
| MT | Root | LOC_Os06g06050.1 | Dwarf3 | d3 | M | 10.1007/s00344-011-9228-6 |
| MT | Root | LOC_Os01g03510.1 | Actin-interacting protein 1 | AIP1 | KD OX | 10.1111/tpj.12065 |
| MT | Culm leaf | LOC_Os06g06050.1 | Dwarf 3 | d3 | M | 10.1093/pcp/pci022 |
| MT | Culm leaf | LOC_Os03g19590.1 | Phytochrome B | phyB | M | 10.1007/s11103-011-9860-3 |
| MT | Seed | LOC_Os02g52480.1 | Kip-related protein1 | KRP1 | OX | 10.1104/pp.106.087056 |
| MT | Seed | LOC_Os04g01590.1 | OsARG | OsARG | M | 10.1111/j.1365-313x.2012.05122.x |
| MT | Shoot seedling | LOC_Os03g19590.1 | Phytochrome B | phyB | M | 10.1093/pcp/pcs097 |
| MT | Shoot seedling | LOC_Os06g06050.1 | Suppressors of lazy1 | SOL1 | M | 10.1073/pnas.1411859111 |
| MT | Panicle flower | LOC_Os04g01590.1 | OsARG | OsARG | M | 10.1111/j.1365-313x.2012.05122.x |
| PTg | Source activity | LOC_Os01g12710.1 | Non-yellow coloring1 | nyc1 | M | 10.1105/tpc.106.042911 |
| PT | Source activity | LOC_Os01g09620.1 | Delay of the onset of senescence | OsDOS | KD OX | 10.1104/pp.106.082941 |
| PT | Source activity | LOC_Os05g10670.1 | Tandem zinc finger 1 | OsTZF1 | KD OX | 10.1104/pp.112.205385 |
| PT | Source activity | LOC_Os04g57850.1 | SLOW ANION CHANNEL-ASSOCIATED 1 | SLAC1 | M | 10.1093/jxb/ers216 |
| PT | Sterility | LOC_Os04g01590.1 | OsARG | OsARG | M | 10.1111/j.1365-313x.2012.05122.x |
| PT | Sterility | LOC_Os02g55570.1 | Shugoshin protein1 | Ossgo1 | M | 10.1111/j.1365-313X.2011.04615.x |
| PT | Sterility | LOC_Os12g42760.1 | OsSpo11-4 | OsSpo11-4 | KD | 10.1371/journal.pone.0020327 |
| PT | Sterility | LOC_Os05g05280.1 | POLLEN TUBE BLOCKED 1 | PTB1 | M | 10.1038/ncomms3793 |
| PT | Sterility | LOC_Os09g27620.1 | PERSISTANT TAPETAL CELL1 | PTC1 | M | 10.1104/pp.111.175760 |
| PT | Sterility | LOC_Os06g02019.1 | Reduced pollen elongation1 | rpe1 | M | 10.1105/tpc.107.054759 |
| PT | Sterility | LOC_Os09g27620.1 | Thermo-sensitive genic male sterility 9-1 | TMS 9-1(OsMS1) | NV | 10.1007/s00122-014-2289-8 |
| PT | Eating quality | LOC_Os09g29404.1 | Isoamylase3 | isa3 | M | 10.1093/pcp/pcr058 |
| PT | Eating quality | LOC_Os03g09250.1 | Rice myo-inositol 3-phosphate synthase 1 | RINO1 | KD | 10.1093/pcp/pcp071 |
| PT | Eating quality | LOC_Os03g09250.1 | Rice myo-inositol 3-phosphate synthase 1 | RINO1 | KD | 10.1111/j.1467-7652.2008.00375.x |
| PT | Flowering | LOC_Os01g69850.1 | OsMADS51 | OsMADS51 | M | 10.1104/pp.107.103291 |
| PT | Flowering | LOC_Os03g19590.1 | Phytochrome B | phyB | M | 10.1105/tpc.105.035899 |
| PT | Flowering | LOC_Os07g49460.1 | Oryza sativa Pseudo-response regulator37 | OsPRR37 | NV | 10.1093/mp/sst088 |
| PT | Panicle flower | LOC_Os03g18360.1 | ETHYLENE OVERPRODUCER 1-like | OsETOL1 | KD OX | 10.1111/tpj.12508 |
| PT | Culm leaf | LOC_Os01g52110.1 | Rice RING zinc-finger protein 34 | OsRZFP34 | KD OX | 10.1007/s11103-014-0217-6 |
| PT | Seed | LOC_Os01g49290.1 | Rice receptor for activated C kinase 1A | OsRACK1A | KD OX | 10.1371/journal.pone.0097120 |
| PT | Othersh | LOC_Os03g18360.1 | ETHYLENE OVERPRODUCER 1-like | OsETOL1 | KD OX | 10.1111/tpj.12508 |
| PT | Others | LOC_Os08g09250.1 | Glyoxalase1 | OsGLY1-11.2 | Others | 10.1111/tpj.12521 |
| Othersh | Othersh | LOC_Os05g50380.1 | ADP-glucose pyrophosphorylase large subunit 3 | LSU3 | M | 10.1071/FP12186 |
| Others | Others | LOC_Os04g35420.1 | OsRecQl4 | OsRecQl4 | OX | 10.1093/pcp/pcs155 |
a
Of agronomic traits associated with functionally characterized genes out of candidate genes in this study.
b
Indicates sub-agronomic trait categories in each of major categories.
c
Indicates methods used for the functional characterization: M indicates mutants by T-DNA/Tos17/Ds insertion; KD, knockdown mutants by RNAi or anti-sense approaches; OX, overexpressed mutants by transgenic approaches; and NV, natural variation; and others, those by other methods besides four major methods.
d
Indicates Digital Object Identifier (DOI).
e
Indicates Resistance or Tolerance relating trait.
f
Indicates Morphological trait.
g
Indicates Physiological trait.
h
Indicates other agronomic traits besides determined major or minor categories.