TABLE 2.
ORFs in V. cholerae RC385 VPI-6 and predicted homology to a CRISPR-Cas system and T6SS
| RC385 locus tag | ORF | Size (bp) | Gene product | V. cholerae strain | Homologue accession no. | Identity (%) |
|---|---|---|---|---|---|---|
| VCRC385_RS05055 | 1 | 412 | Integrase (IntV1) | N16961 | NP_230494 | 97 |
| VCRC385_RS05060 | 2 | 183 | Cas6/Csy4 | CAG76582 | 38 | |
| VCRC385_RS05065 | 3 | 351 | Hypothetical protein | |||
| VCRC385_RS05070 | 4 | 315 | Cas7 | Q97Y91 | 14 | |
| VCRC385_RS05075 | 5 | 978 | Cas3/Cas2 | CAG76578 | 37 | |
| VCRC385_RS05080 | 6 | 329 | Cas1 | CAG76577 | 58 | |
| VCRC385_RS05085 | 7 | 264 | Regulator | N16961 | NP_231407 | 38 |
| VCRC385_RS05090 | 8 | 172 | Hcp1 (T6SS) | N16961 | NP_232418 | 97 |
| VCRC385_RS05095 | 9 | 658 | VgrG (T6SS) | N16961 | NP_232419 | 69 |
| VCRC385_RS05100 | 10 | 262 | Hypothetical protein | |||
| VCRC385_RS05105 | 11 | 536 | Hypothetical protein | |||
| VCRC385_RS0318635 | 12 | 262 | Glycosyl hydrolase | |||
| VCRC385_RS05110 | 13 | 99 | Hypothetical protein (VCA0105) | N16961 | NP_232506 | 53 |
| VCRC385_RS0318630 | 14 | 262 | Glycosyl hydrolase | |||
| VCRC385_RS05115 | 15 | 209 | DUF2628 Domain | |||
| VCRC385_RS05120 | 16 | 179 | Hypothetical protein | |||
| VCRC385_RS05125 | 17 | 58 | VefA (VC1785) | N16961 | NP_231420 | 91 |
| VCRC385_RS05130 | 18 | 158 | RadC (VC1786) | N16961 | NP_231421 | 99 |
| VCRC385_RS05135 | 19 | 142 | Hypothetical protein (VC1804) | N16961 | NP_231439 | 91 |
| VCRC385_RS05140 | 20 | 136 | Hypothetical protein (VC1805) | N16961 | NP_231440 | 98 |
| VCRC385_RS05145 | 21 | 328 | GTPase (VC1806) | N16961 | NP_231441 | 97 |
| VCRC385_RS05150 | 22 | 213 | Hypothetical protein (VC0494) | N16961 | NP_230148 | 31 |
| VCRC385_RS05155 | 23 | 344 | Hypothetical protein (VC1808) | N16961 | NP_231442 | 30 |
| VCRC385_RS05160 | 24 | 66 | VefB (VC1809) | N16961 | NP_231443 | 97 |