Table 1. Strains of Corynebacterium pseudotuberculosis isolated from buffalo diagnosed with Oedematous Skin Disease in Egypt during the summer of 2008.
Strain | Genome size (bp) | Mean coverage depth | De novo assembler | CDS | tRNA | rRNA | Accession number |
---|---|---|---|---|---|---|---|
31 [19] | 2,402,956 | 550x | MIRA 4.0.2; SPADES 3.1.1 | 2248 | 47 | 12 | CP003421.3 |
32 | 2,403,533 | 56.61x | Newbler 2.9 | 2272 | 52 | 12 | CP015183 |
33 | 2,403,550 | 104.11x | Newbler 2.9 | 2281 | 52 | 12 | CP015184 |
34 | 2,403,454 | 58.94x | MIRA 3.9.18 | 2286 | 49 | 12 | CP015192 |
35 | 2,403,502 | 112.68x | Newbler 2.9 | 2276 | 52 | 12 | CP015185 |
36 | 2,403,412 | 172.02x | SPAdes 3.6.0 | 2279 | 49 | 12 | CP015186 |
38 | 2,403,515 | 160.27x | SPAdes 3.6.0 | 2281 | 49 | 12 | CP015187 |
39 | 2,403,579 | 241.79x | SPAdes 3.6.0 | 2281 | 49 | 12 | CP015188 |
43 | 2,365,075 | 218.07x | Newbler 2.9 | 2218 | 51 | 12 | CP015189 |
46 | 2,366,565 | 249.57x | SPAdes 3.6.0 | 2218 | 48 | 12 | CP015190 |
48 | 2,403,301 | 306.54x | SPAdes 3.6.0 | 2281 | 49 | 12 | CP015191 |