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. 2017 Apr 20;169(3):470–482.e13. doi: 10.1016/j.cell.2017.04.003
REAGENT OR RESOURCE SOURCE IDENTIFIER
Antibodies

Mouse monoclonal anti-His QIAGEN Cat# 34660
Rabbit polyclonal anti-DAF-2 This Study N/A
Rabbit polyclonal anti-CHN-1 This Study N/A
Mouse monoclonal anti-FLAG Sigma-Aldrich Cat# F3165; RRID: AB_259529
Rabbit anti-UNC-45 Gazda et al., 2013 N/A
Mouse Monoclonal anti-alpha Tubulin (Clone DM 1A) Sigma-Aldrich Cat# T9026; RRID: AB_477593
Mouse Monoclonal anti-alpha Tubulin (Clone B-5-1-2) Sigma-Aldrich Cat# T6074; RRID: AB_477582
Peroxidase-conjugated AffiniPure Goat Anti-Mouse IgG+IgM Jackson Immuno Research Cat# 115-035-003; RRID: AB_10015289
Peroxidase-conjugated AffiniPure Mouse Anti-Rabbit IgG+IgM Jackson Immuno Research Cat# 211-035-109; RRID: AB_2339150
Donkey anti-rabbit IRDye 800CW/680 Li-Cor Cat# 926-32223; RRID: AB_621845
Donkey anti-mouse IRDye 800CW/680 Li-Cor Cat# 926-32212; RRID: AB_621847
Mouse monoclonal anti-Actin Abcam Cat# ab8224; RRID: AB_449644
Rabbit polyclonal anti-AKT Cell Signaling Cat# 9272; RRID:AB_329827
Rabbit monoclonal anti-Phospho AKT (Ser473) Cell Signaling Cat# 4060S; RRID: AB_2315049
Rabbit polyclonal anti-phospho Drosophila AKT (Ser505) Cell Signaling Cat# 4054S; RRID: AB_331414
Rabbit monoclonal anti-ATG7 Novus Biologicals Cat# NBP1-95872; RRID: AB_11011190
Rabbit polyclonal anti-Chicken IgG Sigma-Aldrich Cat# C2288; RRID: AB_258791
Rabbit polyclonal anit-CHIP Milipore Cat# PC711; RRID: AB_2198058
Rat monoclonal anti-GFP Chromotek Cat# 3h9, ABIN398304; RRID: AB_10773374
Mouse monoclonal anti-Histidine-Tag Serotec Cat# MCA1396; RRID: AB_322084
Rat monoclonal anti-Hsp90 Abcam Cat# ab13494; RRID: AB_300398
Rabbit polyclonal anti-LC3B Novus Biologicals Cat# NB100-2220; RRID: AB_10003146
Mouse monoclonal anti-p62 Santa Cruz Cat# sc-28359; RRID: AB_628279
Rabbit anti-PDK1 Cell Signaling Cat# 3062; RRID: AB_2236832
Rabbit polyclonal anti-mTOR Abcam Cat# ab45989; RRID: AB_944296
Rabbit monoclonal anti-IGF1R Cell Signaling Cat# 9750S; RRID: AB_10950969
Rabbit polyclonal anti-INSR Santa Cruz Biotechnology Cat# sc-711; RRID: AB_631835
Goat polyclonal anti-gamma Tubulin Santa Cruz Biotechnology Cat# sc-7396; RRID: AB_2211262
Rabbit polyclonal anti-Stub1 (CHIP) Abcam Cat# 69451; RRID: AB_2198071
Rabbit polyclonal anti-dINSR This Study N/A

Bacterial and Virus Strains

BL21-CodonPlus (DE3)-RIL New England Biolabs Cat# C2530H
OP50 CGC N/A
HT115 CGC N/A

Chemicals, Peptides, and Recombinant Proteins

completeTablets EDTA free Sigma-Aldrich Cat# 4693132001
UbcH5b Boston Biochem Cat# E2-622
FLAG::Ubiquitin Boston Biochem Cat# U-120
E1 activating Enzyme Enzo Life Sciences Cat# BML-UW9410-0050
Ubiquitin Conjugation Reaction Buffer Enzo Life Sciences Cat# BML-KW9885-0001
ATP Regeneration Solution Enzo Life Sciences Cat# BML-EW9810-0100
Ubiquitin Sigma-Aldrich Cat# U6253
UbK0 Boston Biochem Cat# UM-Nok
FLAG M2 Affinity Gel Sigma-Aldrich Cat# A2220
3X FLAG peptide Sigma-Aldrich Cat# F4799
Bafilomycin A1 LC-Labs Cat# B1080
Chloroquine diphosphate salt Sigma-Aldrich Cat# C6628
Dynamin Inhibitor V-34-2 Calbiochem Cat# 324414
Methylviologen dichloride hydrate Sigma-Aldrich Cat# 856177-CAS75365-73-0
MG132 Peptanova Cat# 3175-V
L-Canavanine Sigma-Aldrich Cat# C1625
Paraquat dichloride hydrate Sigma-Aldrich Cat# 36541
RU486 (Mifepristone) Sigma-Aldrich Cat# M8046
VSV::CHN-1::6His This Study N/A
VSV::CHN-1 H218Q::6His This Study N/A
VSV::CHN-1 ΔU-box::6His This Study N/A
VSV: CHN-1 N9D, K13A, K73A::6His This Study N/A
UFD-2::6His This Study N/A
6His::DAF-2 C terminus (aa 1205-1928) This Study N/A
WWP-1::6His This Study N/A
CHIP Arndt et al., 2005 N/A
INSR Full Length This Study N/A
INSR K1047R This Study N/A
dINSR (aa 1815-2144) This Study N/A
INSR C terminus (aa 987-1428) This Study N/A
TRIzol Invitrogen Cat# 15596026

Critical Commercial Assays

ECL kit GE Healthcare Cat# RPN2232
QuickChange Lightning Site-Directed Mutagenesis Kit Agilent Technologies Cat# 210519
InviTrap Spin Universal RNA Mini Kit Stratec Cat# 1060100300
jetPRIME transfection reagent Peqlab Cat# 114-75
High-Capacity cDNA Reverse Transcription Kit Applied Biosystems Cat# 4368814
Brilliant III Ultra-Fast SYBR Green QPCR Master Mix Agilent Technologies Cat# 600882
Sso Fast EvaGreen supermix Bio-Rad Cat# 1725201
iScript cDNA Synthesis Kit Bio-Rad Cat# 1708891
RNeasy Mini Kit QIAGEN Cat# 74104

Experimental Models: Cell Lines

HEK293 (Human embryonic kidney cells) Sigma-Aldrich Cat# 85120602
HeLa (Epitheloid cervix carcinoma cells (female)) Sigma-Aldrich Cat# 93021013

Experimental Models: Organisms/Strains

C. elegans: unc-119(ed4)III; hhIs136[unc-119(+); chn-1p::chn-1::FLAG] This study N/A
C. elegans:unc-119(ed4)III; hhIs145[unc-119(+); chn-1p::chn-1(U-box)::FLAG] This study N/A
C. elegans: Bristol (N2) strain as wild-type (WT) CGC N2
C. elegans: chn-1(by155)I CGC WormBase ID: WBVar00000641
C. elegans:chn-1(tm2692)I CGC WormBase ID: WBVar00251538
C. elegans:daf-16(mgDf47)I CGC WormBase ID: WBVar00275574
C. elegans:daf-16(m26)I CGC WormBase ID: WBVar00088538
C. elegans:ufd-2(tm1380)II CGC WormBase ID: WBVar00250374
C. elegans:daf-2(e1370)III CGC WormBase ID: WBVar00143949
C. elegans:daf-2(e1368)III CGC WormBase ID: WBVar00143947
C. elegans:daf-2(m212)III CGC WormBase ID: DR608
C. elegans:daf-2(m596)III CGC WormBase ID: WBVar00088714
C. elegans:daf-2(m579)III CGC WormBase ID: WBVar00088710
C. elegans:daf-2(sa193)III CGC WormBase ID: WBVar00242513
C. elegans:daf-2(e979)III CGC WormBase ID: WBVar00143653
C. elegans:daf-2(e1391)III CGC WormBase ID: WBVar00143967
C. elegans:daf-2(m577)III CGC WormBase ID: WBVar00088709
C. elegans:daf-2(gk390525)III CGC WormBase ID:WBVar00813221
C. elegans:eat-2(ad465) CGC WormBase ID: WBVar00000014
C.elegans: unc-119(ed4)III CGC WormBase ID: WBVar00145094
C. elegans:dgEx80[pAMS66 vha-6p::Q44::YFP + rol-6(su1006)] Mohri-Shiomi and Garsin, 2008 N/A
C. elegans:zIs356(daf-16p::daf-16::GFP; rol-6) Lee et al., 2001 N/A
C. elegans:rmIs133(unc-54::Q40::YFP) Morley et al., 2002 N/A
D. melanogaster: w1118 Bloomington Stock Center RRID: BDSC_3605
D. melanogaster: actin-Gal4 Bloomington Stock Center RRID: BDSC_3954
D. melanogaster: RNAi-dCHIP VDRC RRID: FlyBase_FBst0460471
D. melanogaster: TIGS-2 Scott Pletscher N/A
D. melanogaster: UAS-dCHIP Verena Arndt N/A

Oligonucleotides

See Table S3 for primer sequences This Study N/A
siRNA human CHIP 5 QIAGEN Cat# SI00081963
siRNA human CHIP 5 QIAGEN Cat# SI03109659
siRNA human ATG7 1 QIAGEN Cat# SI04194883
siRNA human ATG7 3 QIAGEN Cat# SI04231360
Allstars negative control siRNA QIAGEN Cat# SI03650318

Recombinant DNA

pET21a-VSV::CHN-1::6His This Study N/A
pET21a- VSV::CHN-1 H218Q::6His This Study N/A
pET21a- VSV::CHN-1 ΔU-box::6His This Study N/A
pET21a- VSV: CHN-1 N9D, K13A, K73A::6His This Study N/A
pET21a-UFD-2::6His This Study N/A
pT7-6His::DAF-2 C terminus (aa 1205-1928) This Study N/A
pET21a-WWP-1::6His This Study N/A
pCMV-tag2b-CHIP Arndt et al., 2005 N/A
pCMV-tag2b-INSR Full Length This Study N/A
pCMV-tag2b-INSR K1047R This Study N/A
pETM-11-dINSR (aa 1815-2144) This Study N/A
pMAL-C2-INSR C terminus (aa 987-1428) This Study N/A
pEGFP-polyQ-25 Westhoff et al., 2005 N/A
pEGFP-polyQ-103 Westhoff et al., 2005 N/A

Software and Algorithms

GraphPad Prism 5 GraphPad Software https://www.graphpad.com/scientific-software/prism/
Image Studio 4.0 LI-COR Biosciences https://www.licor.com/bio/products/software/image_studio/
Excel 2013 Microsoft https://products.office.com/en-us/excel
XLSTAT XLSTAT https://www.xlstat.com/en/
ImageJ 1.48v Wayne Rasband (NIH) https://imagej.nih.gov/ij/