Figure 3.

The Gene Ontology (GO) terms predicted by COFACTOR were based on the structural models of the βb-outer membrane proteins (OMPs) and outer membrane (OM) lipoproteins. The GO terms were assigned for three domains: molecular function, biological process, and cell localization. COFACTOR usually predicted more than one term for each GO domain for the target protein structure. The GO terms were collapsed to the closest parent term (based on the AmiGO2 database) to facilitate the overall view of the GO terms. In some cases, related terms were maintained for convenience, as indicated: 1—transport is also a child term of establishment of localization; 2—establishment of localization is also a child term of localization; 3—outer membrane is also a child term of membrane; 4—transferase activity and hydrolase activity are also children terms of catalytic activity; 5—ion binding and nucleotide binding are also children terms of binding; 6—cellular metabolic process is also a child term of metabolic process and cellular process; and 7—protein metabolic process is also a child term of metabolic process.