Table 1.
Functional annotation of βb-outer membrane proteins (OMPs) and outer membrane (OM) lipoproteins.
| Gene ID | Product/original annotationa | Uniprot protein name | KEGG orthologs | Interpro scan analysis | |
|---|---|---|---|---|---|
| βb-OMPs | LIC10496 | Conserved hypothetical protein | Uncharacterized protein | TolC-like OMP | OM efflux protein |
| LIC10714 | OM receptor protein | OM receptor protein (smc) | OM receptor for Fe3+-dicitrate/TonB-dependent receptor (TBDR) | TBDR | |
| LIC10881 | OMP, TonB dependent | OMP, TonB dependent | TBDR | TBDR [plug and β-barrel (βb) domainsb] | |
| LIC10896 | TonB-dependent outer membrane receptor | TonB-dependent outer membrane receptor (fecA) | TonB-dependent outer membrane receptor | TBDR | |
| LIC10964 | TonB-dependent outer membrane hemin receptor | TonB-dependent outer membrane hemin receptor (phuR) | TonB-dependent outer membrane hemin receptor | TBDR | |
| LIC11086 | Conserved hypothetical protein | Uncharacterized protein | Hypothetical protein | MetA-pathway of phenol degradation, putative | |
| LIC11211 | Hypothetical protein | Uncharacterized protein | Hypothetical protein | None predicted | |
| LIC11268 | Conserved hypothetical protein | Uncharacterized protein | Hypothetical protein | Alginate export domain | |
| LIC11458 | OMP, porin superfamily | OMP, porin superfamily (outer membrane LPS export porin—lps-ep—familyc) | Hypothetical protein | None predicted | |
| LIC11506 | OMP | OMP | Hypothetical protein | Predicted OMP, Leptospiraceae | |
| LIC11623 | OMP | OMP | Hypothetical protein, Oma87-like OMP, BamA | Bacterial surface antigen (D15)/surface antigen variable number | |
| LIC12254 | OMP | OMP | Hypothetical protein, Oma87-related protein, surface antigen (D15) | Bacterial surface antigen (D15) | |
| LIC12374 | OMP, TonB dependent | OMP, TonB dependent (btuB) | TonB-dependent outer membrane receptor, obalamin receptor protein | TBDR, βb, plug domain | |
| LIC12575 | Cytoplasmic membrane protein | Cytoplasmic membrane protein | Cytoplasmic membrane protein, TolC-like protein | Outer membrane efflux protein | |
| LIC13477 | Conserved hypothetical protein | Uncharacterized protein | Hypothetical protein | None predicted | |
| LIC20019 | Conserved hypothetical protein | Uncharacterized protein | Hypothetical protein | Putative porin/Porin 6 | |
| LIC20087 | OMP | OMP | Putative OMP, hypothetical protein | None predicted | |
| LIC20151 | TonB-dependent outer membrane receptor | TonB-dependent outer membrane receptor | TonB-dependent hemin-binding protein | TBDR, plug and βb domains | |
| OM lipoproteins | LIC10024 | Adenylate/guanylate cyclase (AGC) | AGC | AGC | 7TM-DISM receptor, extracellular domain, type 1; nucleotide cyclase; adenylyl cyclase class-3/4/guanylyl cyclase |
| LIC10647 | Conserved hypothetical protein | Uncharacterized protein | Hypothetical protein | None predicted | |
| LIC10713 | Putative lipoprotein | Putative lipoprotein | Putative lipoprotein, peptidase M75 | None predicted | |
| LIC11003 | LipL71 | LipL71 | LipL71, peptidoglycan-binding protein LysM | Domain of unknown function DUF4398; LysM domain | |
| LIC11755 | Conserved hypothetical protein | Uncharacterized protein | Hypothetical protein | None predicted | |
| LIC12048 | Conserved hypothetical protein | Uncharacterized protein | Hypothetical protein | None predicted | |
| LIC13411 | Putative lipoprotein | Putative lipoprotein | Hypothetical proteins | None predicted | |
| LIC20172 | Lipoprotein | Lipoprotein | Hypothetical proteins | LruC domain; domain of unknown function DUF4842 | |
aAs annotated in the LIC genome.
bDomains corresponding to LIC10881* (LIC10881 + LIC10882).
cAnnotated based on results from Transporter Classification Database.