Table 4.
Over-represented functional categories in G1 and G2 comparisons with P < 0.05.
| Compact | Loose | |
|---|---|---|
| 01 Cellular process | 2.2 | |
| 01.01 Cell growth and death | 3.6 | |
| 01.01.04 Cell growth | 4.1 | |
| 01.02 Cell. component org. and biogen. | 2.5 | |
| 01.02.01 Cell wall org. and biogenesis | 2.8 | |
| 01.02.01.01 Cell wall metabolism | 2.7 | |
| 01.02.01.01.01 Cell wall biosynthesis | 4.6 | |
| 01.02.01.01.01.02 Cellulose biosynthesis | 6.9 | |
| 01.02.01.01.02 Cell wall catabolism | 3.7 | |
| 01.02.01.01.03 Cell wall modification | 2.9 | |
| 01.02.01.01.03.02 Pectin modification | 3.0 | |
| 01.02.01.02 Cell wall structural protein | 3.8 | |
| 01.02.02 Nucleus | 3.3 | |
| 01.02.02.01 Chrom. org. and biogenesis | 3.3 | |
| 01.02.02.01.01 Chromatin assembly | 5.4 | |
| 01.02.03 Cytoskeleton org. and biogen. | 3.6 | |
| 01.02.03.03 Microtub. org. and biogen. | 5.1 | |
| 01.02.03.03.01 Microtubule-driven mov. | 6.8 | |
| 04 Metabolism | ||
| 04.01 Cellular metabolism | ||
| 04.01.08.03 Copper oxidase family | 8.6 | |
| 04.02 Primary metabolism | ||
| 04.02.02 Carbohydrate metabolism | ||
| 04.02.02.08 Polysaccharide metabolism | ||
| 04.02.02.08.01 Beta-1,3 glucan met. | 3.4 | |
| 04.02.02.08.01.01 Beta-1,3 glucan cat. | 4.2 | |
| 04.02.07.05 Steroid metabolism | 2.6 | |
| 04.02.07.05.01 Steroid biosynthesis | 3.1 | |
| 04.02.08.01 Nucleic acid metabolism | ||
| 04.02.08.01.01 DNA metabolism | 2.0 | |
| 04.02.08.01.01.05 DNA replication | 5.4 | |
| 04.03 Secondary metabolism | 1.5 | 1.7 |
| 04.03.01 Prim. amino acids deriv. met. | ||
| 04.03.01.01 Alkaloid metabolism | ||
| 04.03.01.01.01 Alkaloid biosynthesis | 3.9 | |
| ….01 Monoterp. indole alkaloid bioS | 5.7 | |
| 04.03.04 Phenylpropanoid met. | 1.9 | 2.2 |
| 04.03.04.01 Flavonoid metabolism | ||
| 04.03.04.01.01 Flavonoid biosynth. | ||
| 04.03.04.01.01.01 Anthoc. biosynth. | 3.1 | |
| 01 Anthoc.-glycoside bioS. | 3.4 | |
| 04.03.04.03 Lignin metabolism | 4.5 | |
| 04.03.04.05.Stilbenoid metabolism | 7.1 | |
| 04.03.04.05.01 Stilbenoid biosynth. | 7.1 | |
| 04.04 Single reactions | 3.4 | |
| 05 Regulation overview | 1.3 | |
| 05.01 Regulation of cell cycle | 4.8 | |
| 5.02 Regulation of gene expression | ||
| 05.02.02 Regulation of transcription | ||
| 05.02.02.01.03 AP2 family | 5.7 | |
| 05.02.02.01.03.02 ERF subfamily | 13.2 | |
| 05.02.02.01.44 MYB family | 4.4 | |
| 06 Response to stimulus | 1.7 | |
| 06.02 Stress response | 1.7 | |
| 06.02.01 Abiotic stress response | ||
| 06.02.01.07 Oxidative stress response | 2.2 | |
| 06.02.02.Biotic stress response | 1.8 | |
| 06.02.02.03 Plant-pathogen interact. | 2.1 | |
| 06.02.02.03.01 R proteins | 2.4 | |
| 07 Signaling | 2.1 | |
| 07.01 Hormone Signaling | 1.8 | |
| 07.01.04.01 Cytokinin metabolism | 6.3 | |
| 07.01.05 Ethylene Signaling | 3.9 | |
| 07.01.05.03 Ethylen.-med. Sign. path. | 4.1 | |
| 07.02 Signaling pathway | 2.2 | |
| 07.02.09 Protein kinase | 3.0 | |
| 07.02.12 Signaling receptor | 9.0 | |
| 08 Transport overview | ||
| 08.02.01.49 Chloride Carrier/Channel | 17.8 | |
| 08.09 Incomp. charact. transport sys. | 2.1 | |
| 08.09.01 transp. of unk. bioch. mech. | 2.6 | |
| 08.09.01.10 Iron/Lead Transporter | 4.7 | |
| 08.09.01.10.01 Oxi.-dep Fe2+ Transp. | 4.7 | |
| 08.12.01 Oxygen transport | 18.0 | |
| 08.13.01.01 Chloride transport | 14.2 | |
| 09 Unknown | 6.4 | 4.9 |
Values are expressed as log2 ratio group/genome.