Table 5.
Over-represented functional categories in G1 and G3 comparisons with P < 0.05.
| Compact | Loose | |
|---|---|---|
| 01 Cellular process | 2.2 | |
| 01.01 Cell growth and death | 3.9 | |
| 01.02 Cellular component org. and biog. | 2.3 | |
| 01.02.01 Cell wall org. and biogenesis | 2.1 | |
| 01.02.01.01 Cell wall metabolism | 2.2 | 1.7 |
| 01.02.01.01.01.02 Cellulose biosynthesis | 3.2 | |
| 01.02.01.01.02 Cell wall catabolism | 3.6 | |
| 01.02.01.01.02.03 Pectin catabolism | 5.9 | |
| 01.02.01.01.03 Cell wall modification | 2.2 | |
| 01.02.02 Nucleus | 3.3 | |
| 01.02.02.01 Chrom. org. and biogen. | 3.3 | |
| 01.02.02.01.01 Chromatin assembly | 5.0 | |
| 01.02.03 Cytoskeleton org. and biogen. | 3.7 | |
| 01.02.03.02 Actin org. and biogenesis | 2.8 | |
| 01.02.03.03 Microtubule org. and biogen. | 5.0 | |
| 01.02.03.03.01 Microtubule-driven mov. | 6.8 | |
| 04 Metabolism | ||
| 04.01 Cellular metabolism | 2.0 | |
| 04.01.01 Amino acid derivative met. | ||
| 04.01.01.01 Cyanoamino acid metabolism | 4.1 | |
| 04.01.06 Nitrogen and sulfur metabolism | 1.9 | |
| 04.01.06.01 Nitrogen metabolism | 2.0 | |
| 04.01.08 Oxidation reduction | 1.8 | |
| 04.01.08.04 Cytochrome P450 oxidored. | 1.9 | |
| 04.01.10.01 Phytoalexin biosynthesis | 8.9 | |
| 04.02.02.06.01 Amino sugar metabolism | 2.7 | |
| 04.02.02.08.01.01 Beta-1,3 glucan cat. | 3.4 | |
| 04.02.02.08.02.01.04 Starch cat. inhibitor | 10.0 | |
| 04.02.04 Coenz. and prosthetic gr. met. | ||
| 04.02.04.04 Pept. deriv. compounds bioS. | 2.1 | |
| 04.02.04.04.01 Glutathione metabolism | 2.1 | |
| 04.02.05.02 Tetrapyrrole metabolism | 3.1 | |
| 04.02.06.06 Storage proteins | 3.6 | |
| 04.02.07.06.01 Wax biosynthesis | 4.0 | |
| 04.02.08.01.01 DNA metabolism | 2.7 | |
| …03 DNA recomb. and repair | 2.4 | |
| 04.02.08.01.01.03.02 repair | 2.3 | |
| 01 Base excision repair | 5.9 | |
| 04.02.08.01.01.05 DNA replication | 6.0 | |
| 04.02.10.01.01.02 HSP-med. prot. folding | 2.1 | |
| 04.02.10.03.03 Protease inhibition | 7.0 | |
| 04.03 Secondary metabolism | 1.9 | |
| 04.03.01.01.01 Alkaloid biosynthesis | 2.3 | |
| ….03.01 Monoterp. indole alkaloid bioS. | 3.5 | |
| 04.03.04 Phenylpropanoid metabolism | 2.9 | |
| 04.03.04.01.01.01 Anthocyanin bioS. | 2.8 | |
| 04.03.04.03 Lignin metabolism | 5.9 | |
| 04.03.04.04 Phenylpropanoid bioS. | 3.7 | |
| 04.03.04.05 Stilbenoid metabolism | 13.0 | |
| 04.03.04.05.01 Stilbenoid biosynthesis | 13.0 | |
| 04.04 Single reactions | 4.3 | |
| 05 Regulation overview | 1.4 | |
| 05.01 Regulation of cell cycle | 5.1 | |
| 05.02.02.01.03 AP2 family | 2.9 | |
| 05.02.02.01.03.02 ERF subfamily | 3.3 | |
| 05.02.02.01.11 bHLH fam. transc. factor | 2.4 | |
| 05.02.02.01.44 MYB fam. transc. factor | 2.5 | 2.1 |
| 05.02.02.01.66 WRKY fam. transc. fact. | 4.2 | |
| 06 Response to stimulus | 1.7 | |
| 06.02.01 Abiotic stress response | 2.0 | |
| 06.02.01.07 Oxidative stress response | 2.7 | |
| 06.02.02 Biotic stress response | 1.4 | |
| 07 Signaling | 1.9 | |
| 07.01 Hormone Signaling | 1.6 | |
| 07.01.02.01 Auxin metabolism | 2.4 | |
| 07.01.04 Cytokinin Signaling | 2.3 | |
| 07.01.04.01 Cytokinin metabolism | 3.2 | |
| 07.01.05 Ethylene Signaling | 2.6 | |
| 07.01.07 Jasmonate salicylate signaling | 2.2 | |
| 07.01.07.01 Jasmonate Signaling | 2.3 | |
| 07.02 Signaling pathway | 2.0 | |
| 07.02.09 Protein kinase | 2.9 | |
| 08 Transport overview | ||
| 08.02.01.07.14 Plant Org. Permease | 6.0 | |
| 08.02.01.49 Chloride Carrier/Channel | 8.5 | |
| 08.09 Incomp. char. transport systems | 2.2 | |
| 08.09.01.10.01 Oxid.-dep Fe2+ Transp. | 2.5 | 5.6 |
| 08.12.01 Oxygen transport | 11.3 | |
| 08.13.01 Anion transport | 2.3 | |
| 08.13.01.01 Chloride transport | 6.8 | |
| 08.14.08 Nucleotide transport | 4.9 | |
| 09 Unknown | 6.2 | 4.0 |
Values are expressed as log2 ratio group/ genome.