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. 2017 Feb 3;28(5):1145–1151. doi: 10.1093/annonc/mdx037

Table 1.

Responses to the technical aspects of the survey

Sequencing platforms
n % Diagnostic N = 9 Research
N = 22
Diagnostic/research, N = 20 P-valuea
Panel size  (genes)
 Small < 50 23 45 6  (67%) 7  (32%) 10  (50%) 0.17
 Medium 51–250 28 55 5  (56%) 14  (64%) 9  (45%) 0.48
 Large 251–1000 26 51 4  (44%) 11  (50%) 11  (55%) 0.86
 Very large 1001–5000 7 14 0  (0%) 4  (18%) 3  (15%) 0.40
 WES 28 55 2  (22%) 16  (73%) 10  (50%) 0.03
 WGS 22 43 0  (0%) 14  (64%) 8  (40%) 0.01
 RNAseq 30 59 3  (33%) 16  (73%) 11  (55%) 0.12
 Transcriptomics 21 41 3  (33%) 13  (59%) 5  (25%) 0.07
Sequencing depth
 <25 1 2 0  (0%) 0  (0%) 1  (5%) 0.37
 25–50 2 4 0  (0%) 0  (0%) 2  (10%) 0.15
 51–100 15 29 0  (0%) 7  (32%) 8  (40%) 0.02
 101–250 10 20 0  (0%) 5  (23%) 5  (25%) 0.08
 251–1000 20 39 9  (100%) 8  (36%) 3  (15%) 0.21
 >1000 3 6 0  (0%) 2  (9%) 1  (5%) 0.37
Certification
 ISO 11 22 2  (22%) 4  (18%) 5  (25%) 0.53
 CLIA 18 35 5  (56%) 5  (23%) 8  (40%) 0.61
 NEN/similar 15b 27 4  (44%) 5  (23%) 5  (25%) 0.93
 None 20b 39 1  (5%) 12  (60%) 6  (30%) 0.01
a

P-value represents χ2 testing comparisons between the intent of the particular initiatives.

b

One initiative did not indicate their intent.

ISO, international organization for standardization; CLIA, clinical laboratory improvement amendments; NEN, Netherlands Standardization Institute.