Table 1.

Retained probe-sets and probe-pairs at different threshold values.

Threshold Value	Number of Probe Sets (Soybean Chip Hyb. to DipC gDNA)	Number of Probe Sets (Soybean Chip Hyb. to TN gDNA)	Number of Probe Pairs (Soybean Chip Hyb. to DipC gDNA)	Number of Probe Pairs (Soybean Chip Hyb. to TN gDNA)	Number of DEGs in DipC	Number of DEGs in TN
20	61,072	61,072	670,388	670,388	6165	6165
60	60,877	60,895	479,538	482,352	6927	6814
100	59,782	59,835	302,834	304,708	7183	7159
150	56,266	56,511	190,570	193,522	7036	7159
200	51,071	51,319	129,806	132,521	6638	6731
300	37,813	38,000	66,907	68,106	5275	5345
500	17,469	18,176	23,464	24,693	2784	2911
600	12,258	12,930	15,701	16,650	2089	2170
700	8896	9566	11,193	12,061	1574	1673
800	6687	7208	8415	9070	1195	1291
900	5140	5657	6559	7140	958	1057
1000	4085	4482	5304	5733	802	877

gDNA: genomic DNA; DEG: differentially expressed gene; TN: Tiga Nicuru; Hyb: Hybridisation.