Table 2. Microhomeologous sequences at the breakpoint junctions; related to Data S1 and Table S5.
Breakpoint junctions with perfect matching microhomology or with a matching identity below 70% are not listed in this table but can be found in Data S1. The sequence of the actual breakpoint junction is the same as the donor reference sequence except when in rare situations de novo mutations occurred and altered the sequence from the reference donor; when de novo mutations are present at the breakpoint junction, it is shown as lower case letters and included in the donor sequence.
| Sample | Total # of nucleotides | # of matching nucleotides | Identity matching | Putative donor sequence (top) and putative target sequence (bottom) | Parent of origin of donor/target sequence |
|---|---|---|---|---|---|
| BAB3097 | 12 | 10 | 83% |
|
mat/mat |
| BAB3097 | 24 | 18 | 75% |
|
mat/mat |
| BAB3097 | 8 | 6 | 75% |
|
mat/mat |
| BAB3097 | 7 | 5 | 71% |
|
pat/pat |
| BAB3097 | 9 | 7 | 78% |
|
mat/pat |
| BAB3596 | 11 | 8 | 73% |
|
pat/mat |
| BAB3596 | 10 | 8 | 80% |
|
mat/pat |
| mCNV3 | 12 | 11 | 92% |
|
NA |
| mCNV3 | 7 | 6 | 86% |
|
NA |
| mCNV3 | 9 | 7 | 78% |
|
NA |
| mCNV3 | 7 | 6 | 86% |
|
NA |
| mCNV3 | 13 | 10 | 77% |
|
NA |
| mCNV3 | 20 | 15 | 75% |
|
NA |
| mCNV4 | 16 | 12 | 75% |
|
mat/mat |
| mCNV4 | 8 | 7 | 88% |
|
mat/mat |
| mCNV7 | 16 | 14 | 88% |
|
pat/pat |
| mCNV7 | 6 | 5 | 83% |
|
pat/pat |
| mCNV7 | 300 | 249 | 80% | AluS-AluY | NA |