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. 2017 Apr 28;8:253. doi: 10.3389/fphys.2017.00253

Table 1.

List of MdGRAS genes and their chemical characteristics.

Gene name Gene locusa Location CDS (bp) Peptide (aa) Strand MWb (kDa) GRAVYc PId IIe AIf
MdGRAS1 MDP0000135256 chr1:16537486.16539435 930 309 − 33.36 −0.011 9.33 42.29 96.60
MdGRAS2 MDP0000252300 chr1:16538919.16544966 2,550 849 − 93.62 −0.547 8.10 52.08 75.54
MdGRAS3 MDP0000119183 chr1:18011215.18015301 1,356 451 − 50.28 −0.263 6.33 43.93 82.20
MdGRAS4 MDP0000825698 chr2:3727360.3729003 1,644 547 − 61.13 −0.316 10.01 59.37 81.72
MdGRAS5 MDP0000134341 chr2:3744608.3746247 1,572 523 − 57.30 −0.156 5.70 45.66 85.64
MdGRAS6 MDP0000256486 chr2:12924073.12925887 1,815 604 − 66.48 −0.378 5.13 52.06 78.86
MdGRAS7 MDP0000139971 chr2:13285923.13292998 2,331 776 − 86.60 −0.126 6.08 45.09 90.70
MdGRAS8 MDP0000247514 chr2:17606743.17608173 1,431 476 − 53.23 −0.069 5.67 43.06 90.99
MdGRAS9 MDP0000165587 chr2:18027038.18028561 1,524 507 − 56.88 −0.392 5.22 48.32 69.29
MdGRAS10 MDP0000859087 chr2:25937193.25938899 1,707 568 − 63.23 −0.446 5.02 44.23 74.00
MdGRAS11 MDP0000159341 chr3:4321397.4322773 1,377 458 + 51.96 −0.272 6.07 54.41 92.64
MdGRAS12 MDP0000194661 chr3:7771083.7773134 2,052 683 − 77.70 −0.645 5.52 53.63 74.64
MdGRAS13 MDP0000796348 chr3:7777819.7780444 2,160 719 − 82.05 −0.547 6.90 42.05 75.80
MdGRAS14 MDP0000194663 chr3:7781197.7788706 5,787 1928 − 218.53 −0.568 5.83 49.45 72.05
MdGRAS15 MDP0000247940 chr3:7827530.7831637 2,715 904 + 101.59 −0.540 5.38 50.48 71.38
MdGRAS16 MDP0000306154 chr3:20678219.20679634 1,365 454 − 50.87 −0.125 6.16 40.19 92.64
MdGRAS17 MDP0000793615 chr3:25279993.25282044 2,052 683 + 75.01 −0.418 5.64 52.31 77.42
MdGRAS18 MDP0000205622 chr3:25473680.25476670 2,007 668 − 74.17 −0.399 5.61 48.56 80.90
MdGRAS19 MDP0000835454 chr3:32975889.32976838 876 291 − 32.90 −0.713 5.40 41.66 68.38
MdGRAS20 MDP0000300311 chr3:33027149.33029331 735 244 − 27.06 0.038 8.86 43.86 90.66
MdGRAS21 MDP0000259453 chr3:33044014.33045333 1,188 395 − 43.95 −0.304 5.87 40.29 84.43
MdGRAS22 MDP0000420150 chr3:33053754.33054086 333 110 + 12.55 0.305 4.53 25.59 119.73
MdGRAS23 MDP0000141505 chr3:33061403.33061960 558 185 + 21.06 0.094 6.82 48.488 92.70
MdGRAS24 MDP0000465513 chr3:33061932.33063815 1,884 627 − 70.91 −0.263 5.50 41.06 81.31
MdGRAS25 MDP0000232659 chr3:33105946.33112977 3,024 1007 − 113.57 −0.535 7.10 50.65 73.76
MdGRAS26 MDP0000147173 chr4:915116.916492 1,377 458 − 51.30 −0.285 5.12 45.39 83.01
MdGRAS27 MDP0000396037 chr4:3510983.3512255 993 330 + 36.34 −0.308 5.33 48.90 67.45
MdGRAS28 MDP0000945004 chr4:4693449.4695500 2,052 683 − 74.98 −0.407 5.69 52.03 77.85
MdGRAS29 MDP0000241048 chr4:12671528.12673775 1,668 555 − 61.88 −0.387 5.98 49.78 79.89
MdGRAS30 MDP0000228483 chr4:16466303.16467886 1,584 527 − 59.59 −0.320 4.82 50.99 76.94
MdGRAS31 MDP0000317825 chr4:16469757.16471367 1,611 536 − 60.75 −0.309 4.67 53.32 75.67
MdGRAS32 MDP0000419045 chr4:18100227.18103427 2,490 829 − 88.67 −0.308 5.82 59.22 73.84
MdGRAS33 MDP0000254936 chr5:411761.422370 3,600 1199 + 133.82 −0.316 6.64 39.77 79.76
MdGRAS34 MDP0000151144 chr5:3168395.3171022 2,400 799 − 87.03 −0.267 6.03 57.31 76.92
MdGRAS35 MDP0000242829 chr5:10558101.10559735 1,635 544 + 60.88 −0.244 4.83 46.59 83.75
MdGRAS36 MDP0000230994 chr5:15148360.15151129 1,572 523 − 58.94 −0.320 6.24 48.46 82.26
MdGRAS37 MDP0000566079 chr5:22506172.22506504 330 110 − 12.50 −0.232 6.04 44.89 80.64
MdGRAS38 MDP0000243351 chr6:9882603.9884659 1,824 607 + 66.98 −0.509 5.19 53.22 72.49
MdGRAS39 MDP0000915100 chr6:9882928.9884982 2,055 694 + 75.47 −0.403 5.56 51.47 78.03
MdGRAS40 MDP0000322003 chr6:9923402.9927244 981 326 + 36.85 −0.214 4.91 43.91 88.50
MdGRAS41 MDP0000124576 chr6:16659904.16660845 567 188 − 21.11 −0.162 6.36 33.54 82.39
MdGRAS42 MDP0000128964 chr6:16680332.16681280 804 267 + 29.94 −0.114 7.19 29.99 84.72
MdGRAS43 MDP0000206202 chr6:23034606.23035559 954 317 − 35.85 −0.707 5.68 39.04 67.41
MdGRAS44 MDP0000159531 chr7:22551974.22553587 1,614 537 − 59.25 −0.215 5.34 55.11 85.72
MdGRAS45 MDP0000315706 chr7:24383528.24394942 2,817 938 − 103.28 −0.432 6.41 47.36 75.69
MdGRAS46 MDP0000275704 chr8:10371640.10374024 2,385 794 − 86.86 −0.327 6.05 55.01 76.76
MdGRAS47 MDP0000287321 chr8:18091272.18096730 1,827 608 + 67.24 −0.270 9.15 46.58 87.42
MdGRAS48 MDP0000441376 chr9:562753.565977 2,091 696 − 77.38 −0.406 5.73 64.97 73.22
MdGRAS49 MDP0000863616 chr9:6708558.6709889 1,332 443 − 49.06 −0.131 5.19 49.04 93.05
MdGRAS50 MDP0000804652 chr9:8891282.8892943 1,662 553 − 62.32 −0.346 5.74 49.48 78.66
MdGRAS51 MDP0000921788 chr9:9424971.9428298 2,073 690 − 77.57 −0.312 8.85 47.18 80.71
MdGRAS52 MDP0000203826 chr9:22347041.22348471 1,431 476 + 54.20 −0.347 6.31 41.21 89.33
MdGRAS53 MDP0000181482 chr9:29373931.29376390 1,938 645 + 70.41 −0.258 4.76 39.14 81.19
MdGRAS54 MDP0000727836 chr10:1113520.1115259 1,740 579 − 64.46 −0.448 5.03 40.79 75.80
MdGRAS55 MDP0000169115 chr10:5639948.5641363 1,416 471 + 53.93 −0.406 6.31 44.39 89.87
MdGRAS56 MDP0000512470 chr10:5640084.5641499 1,416 471 + 53.93 −0.406 6.31 44.39 89.87
MdGRAS57 MDP0000307619 chr10:18265808.18267481 1,464 487 − 54.88 −0.243 6.07 46.99 86.12
MdGRAS58 MDP0000288971 chr10:22109238.22112956 831 276 − 31.19 −0.097 5.27 47.65 91.45
MdGRAS59 MDP0000162468 chr10:26355418.26356833 1,416 471 + 53.93 −0.406 6.31 44.39 89.87
MdGRAS60 MDP0000443053 chr10:29148732.29150108 1,377 458 − 51.67 −0.211 5.81 52.99 90.74
MdGRAS61 MDP0000607785 chr10:32638991.32646762 1,821 606 + 67.87 −0.369 6.58 43.64 76.73
MdGRAS62 MDP0000715138 chr11:2058625.2059440 717 238 − 26.65 −0.444 5.12 46.87 68.49
MdGRAS63 MDP0000389025 chr11:4337648.4339036 1,389 462 + 52.60 −0.243 6.03 58.05 94.35
MdGRAS64 MDP0000264347 chr11:8307859.8309883 2,025 674 + 76.62 −0.616 5.40 48.74 74.32
MdGRAS65 MDP0000287039 chr11:8329524.8331601 1,233 410 + 47.21 −0.377 7.20 38.27 78.71
MdGRAS66 MDP0000851230 chr11:8330639.8332645 2,007 668 − 76.04 −0.609 5.96 45.35 73.13
MdGRAS67 MDP0000289783 chr11:8333605.8335590 1,986 661 − 75.26 −0.570 6.47 54.65 70.67
MdGRAS68 MDP0000287040 chr11:8334218.8339685 4,134 1377 + 155.67 −0.517 6.02 52.42 72.45
MdGRAS69 MDP0000289784 chr11:8336934.8339074 2,100 699 − 78.44 −0.478 5.90 47.91 73.96
MdGRAS70 MDP0000287041 chr11:8340645.8342651 2,007 668 + 76.04 −0.609 5.96 45.35 73.13
MdGRAS71 MDP0000250943 chr11:8344394.8346472 2,076 692 − 78.26 −0.562 5.89 46.69 71.03
MdGRAS72 MDP0000827722 chr11:8398699.8400897 2,199 732 + 82.40 −0.519 5.80 44.56 72.45
MdGRAS73 MDP0000453000 chr11:8405492.8408822 3,054 1017 + 114.99 −0.545 5.86 46.75 72.50
MdGRAS74 MDP0000227056 chr11:8417502.8420917 2,607 868 + 97.64 −0.580 6.17 52.53 65.66
MdGRAS75 MDP0000236041 chr11:8419367.8421957 2,313 770 + 88.11 −0.491 8.69 45.15 77.70
MdGRAS76 MDP0000581417 chr11:8434126.8436324 2,199 732 − 82.40 −0.519 5.80 44.56 72.45
MdGRAS77 MDP0000822651 chr11:10148161.10149699 1,539 512 − 57.41 −0.381 5.33 47.06 68.22
MdGRAS78 MDP0000301368 chr11:20713600.20715024 1,425 474 + 52.98 −0.156 5.95 40.62 94.49
MdGRAS79 MDP0000809337 chr11:25863922.25865673 1,752 583 + 64.77 −0.378 5.94 51.14 84.32
MdGRAS80 MDP0000321018 chr11:25863923.25875124 3,474 1157 + 130.01 −0.289 6.43 45.30 87.14
MdGRAS81 MDP0000768445 chr11:34920904.34922793 1,889 629 + 71.39 −0.276 5.81 48.55 80.59
MdGRAS82 MDP0000119093 chr12:19433725.19435980 2,256 751 + 84.11 −0.499 7.09 48.76 74.51
MdGRAS83 MDP0000884524 chr12:24351825.24353366 1,542 513 + 56.34 −0.119 5.36 34.40 92.22
MdGRAS84 MDP0000148294 chr12:24959928.24961310 1,383 460 − 52.22 −0.303 4.90 58.00 83.91
MdGRAS85 MDP0000235134 chr12:24972396.24973970 1,575 525 − 59.08 −0.337 4.67 53.02 75.41
MdGRAS86 MDP0000926466 chr12:24983309.24984916 1,608 535 − 60.29 −0.344 4.72 52.16 75.08
MdGRAS87 MDP0000666991 chr12:25017893.25019506 1,614 537 + 61.11 −0.347 4.69 51.34 71.55
MdGRAS88 MDP0000397638 chr12:26835765.26838962 2,475 824 − 88.38 −0.296 6.01 55.30 76.52
MdGRAS89 MDP0000266986 chr13:2853393.2854769 1,377 458 + 51.63 −0.180 5.67 53.61 94.78
MdGRAS90 MDP0000464809 chr13:7394453.7398805 2,856 951 + 105.52 −0.238 6.01 49.95 83.71
MdGRAS91 MDP0000122441 chr13:13603697.13605022 1,326 441 − 49.16 −0.013 8.38 47.79 87.82
MdGRAS92 MDP0000245252 chr13:13603924.13605249 1,326 441 − 49.11 −0.013 8.25 46.59 86.94
MdGRAS93 MDP0000522931 chr13:13606211.13607461 1,251 416 − 46.86 −0.077 5.19 37.37 90.41
MdGRAS94 MDP0000245253 chr13:13606548.13608350 1,803 600 − 67.20 −0.225 4.97 35.14 80.88
MdGRAS95 MDP0000173434 chr13:25599457.25600123 597 198 + 21.97 0.356 6.14 44.59 119.19
MdGRAS96 MDP0000138367 chr13:25626475.25627141 495 164 − 18.47 0.405 5.84 33.17 120.67
MdGRAS97 MDP0000274120 chr13:26280448.26284950 3,743 980 + 107.63 −0.315 6.78 49.41 80.11
MdGRAS98 MDP0000308434 chr13:30511943.30513601 1,659 552 − 61.15 −0.647 6.07 40.73 66.61
MdGRAS99 MDP0000431628 chr14:22609508.22611103 1,596 531 − 58.82 −0.149 5.78 56.26 87.29
MdGRAS100 MDP0000258655 chr14:22631424.22637535 777 258 + 29.07 −0.279 8.86 50.64 85.81
MdGRAS101 MDP0000259403 chr14:22631424.22637537 777 258 + 29.07 −0.279 8.86 50.64 85.81
MdGRAS102 MDP0000319851 chr14:28611108.28615187 2,319 772 87.26 −0.146 8.63 43.98 95.08
MdGRAS103 MDP0000171602 chr14:28838647.28840187 1,506 501 + 56.15 −0.388 5.37 46.69 66.99
MdGRAS104 MDP0000687763 chr14:28859934.28861253 1,320 440 − 49.36 −0.292 5.92 43.43 76.30
MdGRAS105 MDP0000840369 chr14:28859987.28861525 1,539 512 − 57.41 −0.381 5.33 47.06 68.22
MdGRAS106 MDP0000196258 chr14:29246984.29249224 747 248 + 27.99 −0.505 7.52 41.95 59.76
MdGRAS107 MDP0000662303 chr15:11412854.11414497 1,644 547 − 59.78 −0.097 5.53 42.31 92.07
MdGRAS108 MDP0000575908 chr15:19584108.19585916 1,809 602 + 66.40 −0.371 5.11 49.76 77.21
MdGRAS109 MDP0000315270 chr15:23947574.23950023 2,181 726 + 79.31 −0.283 5.26 48.40 85.76
MdGRAS110 MDP0000295058 chr15:25739441.25740609 1,035 344 + 38.97 −0.104 6.01 43.81 87.53
MdGRAS111 MDP0000187914 chr15:25748188.25749720 1,533 510 − 57.15 −0.072 6.04 45.81 89.67
MdGRAS112 MDP0000241137 chr15:25750590.25752014 1,425 474 + 52.94 −0.046 5.69 43.48 89.51
MdGRAS113 MDP0000263576 chr17:336468.348106 4,695 1564 − 175.11 −0.600 5.36 53.34 69.93
MdGRAS114 MDP0000441088 chr17:844678.846561 1,884 627 + 70.97 −0.272 5.51 39.89 79.60
MdGRAS115 MDP0000784909 chr17:4316837.4319083 2,247 747 − 81.54 −0.295 5.56 59.76 77.30
MdGRAS116 MDP0000827871 chr17:7181440.7182768 1,329 442 − 49.03 −0.127 5.30 46.49 91.49
MdGRAS117 MDP0000152670 chr17:9016383.9018038 1,656 551 − 61.95 −0.355 6.39 53.78 78.62
MdGRAS118 MDP0000284679 chr17:9255749.9257927 1,917 638 + 70.63 −0.136 5.32 52.66 85.00
MdGRAS119 MDP0000205236 chr17:9258368.9260546 1,917 638 + 70.63 −0.136 5.32 52.66 85.00
MdGRAS120 MDP0000289554 chr17:10806972.10811830 1,926 641 − 70.67 −0.198 9.28 48.25 90.41
MdGRAS121 MDP0000269044 chr17:10818117.10822975 1,926 641 − 70.67 −0.198 9.28 48.25 90.41
MdGRAS122 MDP0000669451 chr17:22659094.22660848 1,755 584 − 63.71 −0.281 4.91 45.60 79.73
MdGRAS123 MDP0000950387 chr17:22676488.22677480 993 330 − 36.58 −0.099 5.50 41.12 84.61
MdGRAS124 MDP0000319342 unanchored:17969995.17971509 1,515 504 − 55.32 −0.205 5.13 34.83 85.40
MdGRAS125 MDP0000237978 unanchored:26304735.26306654 1,920 639 − 70.24 −0.287 5.25 46.96 76.51
MdGRAS126 MDP0000640034 unanchored:50237359.50239266 1,908 635 + 69.73 −0.274 5.26 47.40 77.92
MdGRAS127 MDP0000291579 unanchored:106037882.106039530 1,593 530 + 60.97 −0.425 9.28 46.99 83.91
a

Gene ID in the apple (Malus × domestica) genome (Malus domestica Genome database v1.0);

b

MW: Molecular weight;

c

GRAVY: Grand average of hydropathicity;

d

PI: Isoelectric point;

e

II: Instability index;

f

AI: Aliphatic index.