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. 2017 Apr 28;9:39. doi: 10.1186/s13073-017-0428-y

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© The Author(s). 2017

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 2 — Functional differences in PD patients based on selected metabolic pathways. a Phylum and (b) genus level composition of six modules that were increased/decreased in PD patients. c All genera were contributing to these modules as expected by random chance, with the exception of MF0065 and MF0118, where a higher than expected proportion of reads contributing could be traced to Eubacterium in PD patients