Fig. 1.

Selected visualization representations available in SPADEVizR. (A) Volcano plot showing Differentially Abundant Clusters (DAC) between baseline and 8 days post-boost. DACs are labeled and colored in red. The size of the dots is proportional to the cell cluster sizes. (B) Dotplot and boxplot showing the cell abundances for the cluster 33 in each sample and each condition. A red violon indicates the distribution of cell abundances. (C) Streamgraph showing absolute and relative abundances for a set of clusters across all the samples. (D) Parallel coordinates showing the phenotype of the cluster 33. Grey ribbon represents the marker expression ranges in the entire dataset. More details about this dataset and analysis are provided in Supplementary Figure S1 and in the user manual