Fig. 5.

An example of aligning simulated data in the presence of inversion. The scale represents the genomic position of the alignment and each tick mark on the scale represents 10 kbp. Only OMBlast with Inversion mode ‘on’ provides the correct alignment. Valouev aligns the query at a completely wrong genomic region. RefAligner and OMBlast with Insertion/Deletion mode ‘on’ align the query at the correct place, but the alignment is in fact incorrect and could not reflect the presence of inversion