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. 2016 Sep 30;33(3):311–319. doi: 10.1093/bioinformatics/btw620

Table 1.

Consistency of pairs of optical mapping alignment methods on the concatenated scaffold of A. baumannii 718 532

OMBlast RefAligner Valouev SOMA
OMBlast 99.4% 84.1% 51.2%
RefAligner 87.2% 48.5%
Valouev 34.5%

Percentages represent the ratio of consistent alignments to the total number of alignments reported by both alignment methods.