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. 2016 Aug 1;66(1):57–73. doi: 10.1093/sysbio/syw060

Table 3.

The posterior predictive analysis of the penguin data for branch length and tree-shape statistics indicating no significant difference in the posterior and posterior predictive tree distributions for model 2 (in Table 2)

Description Notation Inline graphic-value Inline graphic
Branch length distribution statistics
The total length of all branches in the tree Inline graphic 0.83
The ratio of the length of the subtree induced by extant taxa and the total tree length Inline graphic 0.33
Genealogical Fu and Li’s Inline graphic calculated as the normalized difference between external branch length in the tree with suppressed sampled ancestor nodes and total tree length. Inline graphic 0.5
The time of the MRCA of all taxa Inline graphic 0.57
The time of the MRCA of all extant taxa Inline graphic 0.46
Tree shape statistics
The maximum number of bifurcation nodes between a bifurcation node and the leaves summed over all bifurcation nodes except for the root Inline graphic 0.75
Coless’s tree imbalance index calculated as the difference between the numbers of leaves on two sides of a node summed over all internal bifurcation nodes and divided by the total number of leaves Inline graphic 0.28
The number of cherries (two terminal nodes forming a monophyletic clade, sampled ancestors are suppressed) Inline graphic 0.54
The number of sampled ancestors SA 0.26

Inline graphic A Inline graphic value is the proportion of times a given test statistic for the simulated tree exceeds the value of that statistic for the tree from the posterior distribution.

Inline graphic All Inline graphic values are within [0.05, 0.95].