Table 2.
Proteins induced in Frankia strain BMG5.1 grown in root exudates.
| Descriptions with Accessions (Dg1/BMG5.1) | Associated pathway (KEGG, BRITE) | C. myrtifolia | A. glutinosa | C. melo |
|---|---|---|---|---|
| LexA family transcriptional regulator (KLL12894.1) | DNA repair and recombination | + | + | + |
| AraC family transcriptional regulator (KLL13116.1) | Base excision repair; transcriptionalregulator | + | + | − |
| restriction endonuclease subunit R, partial (KLL09521.1) | Hydrolaseactivity | + | + | + |
| 5-hydroxyisourate hydrolase (KLL11137.1) | Nucleotidemetabolism | + | − | − |
| ribonuclease PH (WP_013872713.1) | Nucleotidyltransferaseactivity | + | − | − |
| FmdB family transcriptional regulator (KLL11411.1) | Transcriptionalregulator | + | − | − |
| TetR family transcriptional regulator (KLL12053.1) | Transcriptionalregulator | + | + | + |
| transcriptionalregulator (WP_052914259.1) | Transcriptionalregulator | + | + | + |
| 50S ribosomal protein L35 (WP_013874486.1/KLL10220.1) | Ribosome formation- Genetic Information Processing; Translation | + | + | − |
| 30S ribosomal protein S30 (KLL12035.1) | Ribosome formation- Genetic Information Processing; Translation | + | + | + |
| 50S ribosomal protein L15 (WP_047221577.1) | Ribosome formation- Genetic Information Processing; Translation | + | + | + |
| arginine–tRNA ligase (WP_043602701.1) | Aminoacyl-tRNAbiosynthesis | + | + | − |
| proline–tRNA ligase (WP_013875411.1) | − | + | − | − |
| cysteine–tRNA ligase (WP_013875400.1) | − | + | + | − |
| histidine–tRNA ligase (WP_013875269.1) | − | + | + | − |
| amidohydrolase (WP_043606140.1) | Acting on carbon-nitrogen bonds, other than peptide bonds | + | + | − |
| prephenatedehydrogenase (WP_013873190.1/KLL11797.1) | Phenylalanine, tyrosine and tryptophan biosynthesis | + | − | − |
| aminoacidtransporter (KLL12013.1) | Putative aminoacidtransporter | + | − | − |
| GlcNAc-PI de-N-acetylase (KLL11416.1) | GPI biosynthesis | + | − | − |
| peptidoglycan-binding lysin domain-containing protein (WP_013872588.1) | − | + | − | − |
| scramblase (WP_013875539.1) | − | + | − | − |
| acetyl-CoAacetyltransferase (WP_043605993.1) | Enzymaticactivity | + | + | − |
| aldo/keto reductase (WP_050803659.1/KLL11374.1) | Enzymaticactivity | + | + | − |
| metallophosphoesterase (WP_013874361.1/KLL10534.1) | Enzymaticactivity | + | − | + |
| peptidase (KLL10005.1.1) | Proteasome | + | + | + |
| oxidoreductase (WP_013874345.1/KLL10011.1) | Citrate cycle | + | + | + |
| cyclopropane-fatty-acyl-phospholipid synthase (KLL12366.1) | Methyltransferases | + | − | − |
| 3-oxoacyl-ACP synthase (KLL12268.1) | Fatty acid biosynthesis and metabolism | + | − | + |
| nitrilotriacetatemonooxygenase (WP_013873307.1) | FMN-dependentoxidoreductase | + | + | + |
| glycogendebranching enzyme (WP_043606277.1) | Glycosylases | + | + | − |
| haloaciddehalogenase (KLL11333.1) | Glyoxylate and dicarboxylatemetabolism;Biosynthesis of secondary metabolites | + | − | − |
| globin (KLL11541.1) | Heme binding; oxygen binding | + | − | − |
| membrane protein (KLL11693.1) | Bacterialsecretion system | + | + | + |
| preproteintranslocasesubunitSecA (KLL10487.1) | Quorum sensing;Proteinexport;Bacterial secretion system | + | + | + |
| ABC transporter (WP_013872693.1) | Ironcomplex transport system | + | + | − |
| ATPase (WP_043607340.1) | Ironcomplex transport system | + | + | − |
| MFS transporter (KLL10396.1) | Nitrate/nitrite transporter | + | + | + |
| NADH:ubiquinone oxidoreductase subunit H, partial (KLL12793.1) | Nitrotoluenedegradation;Carbonmetabolism | + | + | + |
| FMN-dependent NADH-azoreductase (KLL11873.1) | Oxidoreductases; Acting on other nitrogenous compounds as donors | + | + | − |
| SDR familyoxidoreductase (WP_050803541.1) | − | + | − | − |
| sulfate adenylyltransferase (KLL12588.1) | Purine and sulfurmetabolism | + | + | − |
| quinolinatesynthetase (WP_013874400.1) | − | + | − | − |
| sulfurtransferase (WP_013871733.1) | Sulfurrelay system | + | − | − |
| phosphoribosylformylglycinamidine synthase II (WP_050803648.1) | − | + | − | − |
| NADPH-dependent FMN reductase (WP_013871832.1) | Riboflavinmetabolism | + | − | − |
| histidine kinase (WP_013872222.1/KLL10514.1) | Signaling | + | + | − |
| putative PAS/PAC sensorprotein (WP_013874756.1) | Signaling | + | − | − |
| glycosyltransferase family 1 (WP_013872309.1/KLL13063.1) | Starch and sucrose metabolism | + | + | − |
| glycosyltransferase (KLL09812.1) | Starch and sucrose metabolism | + | − | − |
| potassium-transporting ATPase subunit A (KLL12342.1) | Two-component system | + | − | − |
| NADPH-dependent F420 reductase (WP_013874441.1) | Uncharacterized | + | − | − |
| acetoacetyl-CoAsynthetase (WP_050803816.1) | Valine, leucine and isoleucine degradation | + | + | − |
| pyridoxamine 5'-phosphate oxidase (KLL12235.1) | Vitamin B6 metabolism | + | + | + |
| carboxymethylenebutenolidase (WP_050803476.1/KLL11047.1) | Biosynthesis of secondary metabolites; Microbial metabolism in diverse environments; Chlorocyclohexane and chlorobenzene degradation | + | + | − |
| Hypotheticalproteina | − | + | + | + |
| Hypotheticalproteinb | − | + | + | − |
| Hypotheticalproteinc | − | + | − | + |
| Hypotheticalproteind | − | + | − | − |
The datasets are a compilation of proteins generated on the basis of the Dg1 and BMG5.1 genome databases.
b
WP_013875584.1, KLL10160.1, WP_013874846.1, WP_052914782.1, WP_013872277.1, WP_043607069.1, WP_013873180.1, WP_050803611.1, WP_050803462.1, and WP_050803545.1.
c
WP_052914777.1, KLL13066.1, and KLL09907.1.