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. 2017 May;27(5):835–848. doi: 10.1101/gr.215038.116

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© 2017 Baaijens et al.; Published by Cold Spring Harbor Laboratory Press

This article is distributed exclusively by Cold Spring Harbor Laboratory Press for the first six months after the full-issue publication date (see http://genome.cshlp.org/site/misc/terms.xhtml). After six months, it is available under a Creative Commons License (Attribution-NonCommercial 4.0 International), as described at http://creativecommons.org/licenses/by-nc/4.0/.

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Figure 3. — Performance of SAVAGE-de-novo and SAVAGE-b-ref, depending on pairwise distance and mixture ratio. (A) Target genome fraction recovered (%) considering all maximally extended contigs ≥500 bp. (B) Overall mismatch rate (%) considering all maximally extended contigs ≥500 bp. (C) Relative error of estimated frequency for the minor strain (%). Frequency estimates were computed using Kallisto, and only assemblies containing exactly two maximally extended contigs longer than 4000 bp were evaluated.