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. 2017 May;27(5):885–896. doi: 10.1101/gr.217117.116

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© 2017 Clavijo et al.; Published by Cold Spring Harbor Laboratory Press

This article, published in Genome Research, is available under a Creative Commons License (Attribution 4.0 International), as described at http://creativecommons.org/licenses/by/4.0/.

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Figure 3. — Comparison between IWGSC annotation and TGACv1 high (HC) and low confidence (LC) genes. IWGSC genes were aligned to the TGACv1 assembly (gmap, ≥90% coverage, ≥95% identity) and classified based on overlap with TGACv1 genes. (A) Identical indicates shared exon–intron structure; contained, exactly contained within the TGACv1 gene; structurally different, alternative exon–intron structure; and missing, no overlap with IWGSC. (B) Bar plot showing proportion of HC TGACv1 protein-coding genes supported by protein similarity or PacBio data. Genes are classified based on overlap with the full set of IWGSC genes.