Table 1.
The whole genome assemblies of isolates of Venturia inaequalis and V. pirina
| Species | Venturia inaequalis | Venturia pirina | |||
|---|---|---|---|---|---|
| Isolate (race) | Vi1 (race 1) = ICMP13258 = MNH120 | Vi1.10 (race 1,10) = EU-B04d | Vi1.2.8.9 (race 1,2,8,9) = 1639 | ViL = 1389 | Vp = ICMP11032 |
| Host range | Malus × domestica | Malus × domestica | Malus × domestica | Eriobotrya japonica | Pyrus communis |
| Estimated genome coverage | 120x | 90x | 89x | 89x | 74x |
| Package used for assembly | Velvet | ALLPATHS -LG | Velvet | ALLPATHS -LG | Velvet |
| Number of scaffolds | 1012 | 1415 | 1680 | 1040 | 364 |
| Size (Mb) | 55 | 61 | 40 | 62 | 41 |
| N50 | 233760 | 136376 | 48770 | 213378 | 332167 |
| N90 | 16289 | 23736 | 11843 | 37088 | 81548 |
| Repeats in total genome (%) | 4.11% | 33.41% | 0.74% | 35.60% | 7.28% |
| Number of predicted genesa | 13333/12546 | 12234 | 12868 | 12258 | 11960 |
| Percentage completeness: partial (full)b | 99.60 (99.19) | 98.79 (95.16) | 98.39 (94.76) | 97.58 (94.76) | 98.39 (95.16) |
| Percentage completeness: partial (full)c | 99.51 (96.45) | 99.37 (97.01) | 99.37 (96.94) | 99.51 (97.22) | 99.65 (97.01) |
aHybrid with hints/ab initio gene predictions for Vi1
bCEGMA analysis using both partial and full gene sequences [25]
cBUSCO analysis using both partial and full gene sequences [26]
dNote the recent race designation change reported for EU-B04 [187], previously reported as race (1,14) by Bus et al. [14]