Table 6.

List and annotation of common DEGs identified in all three comparison of libraries FAB vs. FNAB, FPAB vs. FPNAB, PAB vs. PNAB.

No	Unigene ID	FAB vs. FNAB		FPAB vs. FPNAB		PAB vs. PNAB		Gene description
		log2FC	Regulated	log2FC	Regulated	log2FC	Regulated
1	c107017_g1	−7.17	Down	−4.94	Down	−2.87	Down	tRNA (adenine(34)) deaminase, chloroplastic
2	c107270_g1	−3.82	Down	−3.05	Down	−5.54	Down	No result
3	c107857_g1	−5.65	Down	−2.94	Down	−3.65	Down	Monogalactosyldiacylglycerol synthase 2, chloroplastic
4	c10793_g1	−5.12	Down	−3.23	Down	−3.69	Down	EG45-like domain containing protein
5	c121523_g1	−6.03	Down	−4.83	Down	−4.72	Down	No result
6	c125095_g1	−3.89	Down	−8.00	Down	−3.30	Down	MIR169e
7	c15548_g1	−7.11	Down	−4.21	Down	−3.57	Down	Alpha-aminoadipic semialdehyde synthase
8	c16039_g1	−4.01	Down	−3.19	Down	−2.87	Down	Putative calcium-transporting ATPase 13, plasma membrane-type
9	c27045_g1	−4.12	Down	−2.65	Down	−2.95	Down	Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6″-O-coumaroyltransferase 1
10	c29048_g1	−4.10	Down	−3.72	Down	−2.94	Down	Zinc finger protein ZAT12
11	c3490_g1	−4.81	Down	−5.33	Down	−3.03	Down	Type I inositol 1,4,5-trisphosphate 5-phosphatase 11
12	c3661_g1	−4.34	Down	−7.71	Down	−3.83	Down	Sigma factor binding protein 2, chloroplastic
13	c36657_g1	−4.25	Down	−4.09	Down	−3.09	Down	Heat shock factor protein HSF24
14	c51152_g1	−4.14	Down	−3.89	Down	−3.30	Down	Hydrophobic protein RCI2B
15	c51204_g1	−3.99	Down	−2.98	Down	−3.11	Down	Heat shock factor protein HSF24
16	c51606_g1	−4.40	Down	−4.40	Down	−2.85	Down	Protein QUIRKY
17	c52215_g2	5.36	Up	3.52	Up	3.65	Up	14 kDa proline-rich protein DC2.15
18	c53596_g1	−6.50	Down	−4.06	Down	−2.73	Down	SPX domain-containing protein 3
19	c55641_g3	4.26	Up	3.54	Up	4.16	Up	Endoglucanase 11
20	c56313_g2	−4.32	Down	−3.69	Down	−3.46	Down	No result
21	c57393_g3	−3.91	Down	−5.54	Down	−2.85	Down	Myb-related protein Myb4
22	c58087_g1	−5.11	Down	−4.55	Down	−4.24	Down	Ubiquitin fusion degradaton protein
23	c58367_g2	−4.57	Down	−6.39	Down	−2.98	Down	Beta-glucosidase 12
24	c65572_g1	−4.00	Down	−5.71	Down	−3.08	down	No result
25	c82312_g1	−4.64	Down	−4.02	Down	−3.43	Down	No result
26	c84944_g1	−4.22	Down	2.50	Up	−2.64	Down	Aquaporin TIP2-1
27	c86078_g1	−6.68	Down	−2.59	Down	−3.32	Down	Inorganic pyrophosphatase 2
28	c94313_g1	−5.36	Down	−4.79	Down	−2.73	Down	No result