Table 2.
Genes differentially expressed in the skeletal muscle of finishing pigs fed a lysine-excess vs. a lysine-adequate diet.
| Gene Symbol | Gene Description | GenBank 1 | p-Value 2 |
|---|---|---|---|
| Down-regulated genes | |||
| ALKBH7 | AlkB, alkylation repair homolog 7 | XM_003123112 | 0.001 |
| AMD1 | Adenosylmethionine decarboxylase 1 | XM_003121345 | 0.013 |
| CFAP20 | Cilia and flagella associated protein 20 | NM_001244786 | 0.001 |
| CFD | Complement factor D (adipsin) | XM_003122985 | 0.009 |
| CHORDC1 | Cysteine and histidine-rich domain (CHORD) containing 1 | NM_001113446 | 0.006 |
| CLCA2 | Chloride channel accessory 2 | XM_003125930 | 0.003 |
| CNTFR | Ciliary neurotrophic factor receptor | XM_003130672 | 0.027 |
| DNAJA1 | Dnaj (Hsp40) homolog, subfamily A, member 1 | NM_001244163 | 0.004 |
| ERLEC1 | Endoplasmic reticulum lectin 1 | XM_003125147 | 0.004 |
| HOXA4 | Homeobox A4 | XM_003134841 | 0.014 |
| HSP90AA1 | Heat shock protein 90 kDa α (cytosolic), class A member 1 | NM_213973 | 0.034 |
| HSPH1 | Heat shock 105 kDa/110 kDa protein 1 | NM_001097504 | 0.014 |
| LCLAT1 | Lysocardiolipin acyltransferase 1 | NM_001142845 | 0.001 |
| ME1 | Malic enzyme 1, NADP+-dependent, cytosolic | XM_001924333 | 0.027 |
| MFAP3 | Microfibrillar-associated protein 3 | XM_003134126 | 0.001 |
| MORF4L2 | Mortality factor 4 like 2 | XM_003135267 | 0.033 |
| SERP1 | Stress-associated endoplasmic reticulum protein 1 | NM_001243260 | 0.016 |
| SLC9A2 | Solute carrier family 9, subfamily A (NHE2, cation proton antiporter 2), member 2 | NM_001100189 | 0.010 |
| TMCO6 | Transmembrane and coiled-coil domains 6 | XM_003124040 | 0.003 |
| UBE2D2 | Ubiquitin-conjugating enzyme E2D 2 | NM_001078673 | 0.028 |
| UBTD1 | Ubiquitin domain containing 1 | XM_003359315 | 0.009 |
| ZMAT5 | Zinc finger, matrin-type 5 | XM_001929010 | 0.001 |
| Up-regulated genes | |||
| CHIT1 | Chitinase 1 (chitotriosidase) | XM_003130296 | 0.009 |
| CHSY3 | Chondroitin sulfate synthase 3 | XM_003123906 | 0.001 |
| CNTROB | Centrobin, centrosomal BRCA2 interacting protein | XM_003358269 | 0.007 |
| CXCR6 | Chemokine (C-X-C motif) receptor 6 | NM_001001623 | 0.000 |
| DBX1 | Developing brain homeobox 1 | XM_003122916 | 0.002 |
| DND1 | DND microrna-mediated repression inhibitor 1 | XM_003124043 | 0.009 |
| GPR182 | G protein-coupled receptor 182 | XM_003126290 | 0.008 |
| H1FOO | Oocyte-specific H1 histone | NM_001205063 | 0.003 |
| LGALS13 | Lectin, galactoside-binding, soluble, 13 | NM_001142841 | 0.005 |
| MYO5B | Myosin VB | XM_003121434 | 0.001 |
| PDCL | Phosducin-like | XM_001927696 | 0.003 |
| XKR4 | XK, Kell blood group complex subunit-related family, member 4 | XM_003355057 | 0.008 |
| ZNF181 | Zinc finger protein 181 | NM_001244818 | 0.037 |
1 The accession number of the gene sequence resided in the GenBank database (http://www.ncbi.nlm.nih.gov); 2 p-Value was obtained from the orthogonal contrast analysis using the Partek Genomics Suite software (Partek Inc., St. Louis, MO, USA). A change in gene mRNA abundance was considered significant when the p-value was less than or equal to 0.05.