Table 1. GSEA results for ICA2 pattern.
Database | Gene set | No. of genes* | Nominal GSEA P† | FDR |
---|---|---|---|---|
Gene ontology | Leukocyte differentiation | 38 | 7.1 × 10−5 | 0.0124 |
Biocarta | PYK2 pathway | 27 | 6 × 10−4 | 0.0183 |
Gene ontology | Lymphocyte differentiation | 26 | 8.6 × 10−5 | 0.0234 |
Biocarta | Keratinocyte pathway | 44 | 2 × 10−4 | 0.024 |
Gene ontology | Haemopoiesis | 71 | 3.22 × 10−4 | 0.0407 |
Gene ontology | Haemopoietic or lymphoid organ development | 73 | 2 × 10−4 | 0.044 |
*Number of genes in gene set mapped by at least one SNP.
†Empirical enrichment P value at a 75th percentile cut-off.