Table 3.

Size of each anchored linkage group for both the previous assembly, Orenil1.1 [16] and the new assembly (O_niloticus_UMD1)

Linkage Group	Orenil1.1	O_niloticus_UMD1	Difference (%)
LG1	31,194,787	38,372,991	7,178,204 (23.0%)
LG2	25,048,291	35,256,741	10,208,450 (40.8%)
LG3	19,325,363	68,550,753	49,225,390 (254.7%)
LG4	28,679,955	38,038,224	9,358,269 (32.6%)
LG5	37,389,089	34,628,617	−2,760,472 (−7.4%)
LG6	36,725,243	44,571,662	7,846,419 (21.4%)
LG7	51,042,256	62,059,223	11,016,967 (21.6%)
LG8	29,447,820	30,802,437	1,354,617 (4.6%)
LG9	20,956,653	27,519,051	6,562,398 (31.3%)
LG10	17,092,887	32,426,571	15,333,684 (89.7%)
LG11	33,447,472	36,466,354	3,018,882 (9.0%)
LG12	34,679,706	41,232,431	6,552,725 (18.9%)
LG13	32,787,261	32,337,344	−449,917 (−1.4%)
LG14	34,191,023	39,264,731	5,073,708 (14.8%)
LG15	26,684,556	36,154,882	9,470,326 (35.5%)
LG16	34,890,008	43,860,769	8,970,761 (25.7%)
LG17	31,749,960	40,919,683	9,169,723 (28.9%)
LG18	26,198,306	37,007,722	10,809,416 (41.3%)
LG19	27,159,252	31,245,232	4,085,980 (15.0%)
LG20	31,470,686	36,767,035	5,296,349 (16.8%)
LG22	26,410,405	37,011,614	10,601,209 (40.1%)
LG23	20,779,993	44,097,196	23,317,203 (112.2%)
Total	657,350,972	868,591,263	211,240,291 (32.1%)
Total (minus gaps)	606,480,097	864,361,263	257,881,166 (42.5%)